CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39182	Soybean	plastid	95.2	95.2
CDX95528	Canola	cytosol	40.58	67.86
CDX92233	Canola	cytosol	8.09	64.65
KRH41639	Soybean	mitochondrion, plastid	58.79	63.96
VIT_17s0000g03610.t01	Wine grape	plastid	63.59	60.6
GSMUA_Achr3P26360_001	Banana	plastid	57.14	58.85
CDY18518	Canola	plastid	59.04	57.94
TraesCS1A01G376400.1	Wheat	plastid	52.09	57.7
Solyc03g119450.2.1	Tomato	nucleus	59.42	57.32
Bra037586.1-P	Field mustard	plastid	58.79	56.92
CDX75965	Canola	plastid	60.43	56.9
CDY51940	Canola	plastid	60.18	56.73
PGSC0003DMT400014644	Potato	plastid	59.04	56.67
Bra001704.1-P	Field mustard	plastid	60.05	56.55
Os05t0551900-00	Rice	plastid	55.63	56.27
AT3G18390.1	Thale cress	plastid	59.8	55.78
KXG22496	Sorghum	plastid	55.5	54.81
HORVU1Hr1G083550.4	Barley	plasma membrane	53.6	54.71
Zm00001d038922_P001	Maize	extracellular	54.87	54.59
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	53.22	54.04
TraesCS1B01G396800.2	Wheat	plastid	53.35	53.28
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	9.36	48.68
CDX95529	Canola	plastid	16.56	43.23
KRG92332	Soybean	plastid	37.29	35.33
KRH02705	Soybean	plastid	34.89	34.76
KRH34465	Soybean	plastid	35.27	34.66
KRH01727	Soybean	plastid	32.49	34.4
KRH70401	Soybean	plastid	23.51	31.69
KRH07419	Soybean	cytosol	8.6	26.05
KRG93409	Soybean	plastid	33.12	25.51
KRG93411	Soybean	plastid	32.24	24.66
KRH60382	Soybean	mitochondrion	11.25	23.99
KRH41679	Soybean	mitochondrion	10.87	23.18
KRH29618	Soybean	nucleus	7.84	21.83
KRH69093	Soybean	mitochondrion	10.87	19.24
KRH24621	Soybean	mitochondrion	10.37	19.2
KRH71856	Soybean	nucleus	10.87	16.6
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	9.86	15.63
KRG93197	Soybean	mitochondrion	11.0	13.32
KRH56532	Soybean	mitochondrion	10.87	13.17

Protein Annotations

EntrezGene:100788177	Gene3D:3.30.110.60	MapMan:35.1	EMBL:ACUP02004242	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G092300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1KIX7	InterPro:IPR001890
InterPro:IPR035920	EnsemblPlants:KRH48490	ProteinID:KRH48490	ProteinID:KRH48490.1	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000294D852
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:8611017..8616783

Molecular Weight (calculated)

90250.9 Da

IEP (calculated)

6.018

GRAVY (calculated)

-0.656

Length

791 amino acids

Sequence
(BLAST)

001: MAFPNTCKLS ELSFKSSFSS LNHPHPPRSF RKFPLRTLTF ASLPTPKPNP SAPWLTKSPS PKRATEPLTA GDPIPDKKPH NPVERIVLRL RNLGLPSEEE
101: EQEEEEEIPA NNPAPVTGEE RLGELLRREW VRPDAVLVGE DDGEEEMILP WEREEEKEVV VVVSEEGLLK KRRVRAPSLA DLTLEDELLR RLRREGMRVR
201: ERVSVPKAGL TQEVMEKIHK RWRKEELVRL KFHEELAKDM RKAHEIVERR TGGLVTWRSG SVMMVYRGID YQGPDSQKEV NEKKGDGFFV PDVSKREDSS
301: TATSTSEKSE VVVREREHPE NMSEAEAEYN ALLDGLGPRF VGWWGTGILP VDADLLPRTV PGYKTPFRLL PTGMRSRLTN AEMTNLRKLA KSLPCHFALG
401: RNRNHQGLAC AILKLWEKSL VAKIAVKRGI QNTNNELMAE ELKMLTGGTL LLRNKYFIVI YRGKDFVPTS VAAVLAEREE LTKQVQDVED KVRCRAVDAI
501: PLGQGEATAQ AGTLAEFYEA QARWGREISP EEREKMVEEA AKTKTAKLVR QIEHKIFIAQ TKKLRAEKLL AKIEASMVPA GPDYDQETIT DEERVMFRKV
601: GLRMKPYLPL GIRGVFDGVV ENMHLHWKHR ELVKLMTKQK TVAFVEDTAR LLEYESGGIL VAIEKVSKEF ALIYYRGKNY KRPITLRPRN LLTKGKALKR
701: HVAMQRHEAL SQHITELEKT IEQMKKELGM TQDSDVEDGG SIEEDDHNQI DISELALSED EDSDGFDNED NSDWDDDEDS EFSEFINDEH P

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.