CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	7.93	63.64
Bra024130.1-P	Field mustard	cytosol	44.21	54.76
CDY30199	Canola	cytosol	43.95	54.45
GSMUA_Achr8P05570_001	Banana	cytosol	23.43	54.07
VIT_11s0016g02100.t01	Wine grape	plastid	57.56	51.7
Solyc07g039500.2.1	Tomato	plastid	50.25	49.14
PGSC0003DMT400056675	Potato	cytosol, plastid	50.5	49.02
CDY46704	Canola	plastid	48.24	48.91
AT4G29750.1	Thale cress	plastid	48.24	45.54
Os09t0363100-01	Rice	plastid	48.49	40.65
EER96635	Sorghum	plastid	46.73	38.57
Zm00001d020230_P006	Maize	plastid	46.73	38.49
TraesCS5B01G190100.1	Wheat	plastid	46.85	38.23
TraesCS5A01G194600.1	Wheat	plastid	46.6	38.03
KRH41639	Soybean	mitochondrion, plastid	33.75	36.86
HORVU5Hr1G057460.1	Barley	nucleus, plastid	46.35	36.69
KRG92332	Soybean	plastid	38.04	36.17
TraesCS5D01G197600.1	Wheat	plastid	40.05	35.18
KRH48490	Soybean	nucleus	34.76	34.89
KRH39182	Soybean	plastid	34.63	34.77
KRH34465	Soybean	plastid	34.89	34.41
KRH01727	Soybean	plastid	30.1	31.99
KRH70401	Soybean	plastid	21.28	28.79
KRH07419	Soybean	cytosol	9.19	27.97
KRG93409	Soybean	plastid	30.6	23.66
KRG93411	Soybean	plastid	30.48	23.4
KRH60382	Soybean	mitochondrion	10.58	22.64
KRH41679	Soybean	mitochondrion	10.58	22.64
KRH29618	Soybean	nucleus	7.43	20.77
KRH69093	Soybean	mitochondrion	10.71	19.02
KRH71856	Soybean	nucleus	10.58	16.22
KRH24621	Soybean	mitochondrion	8.69	16.16
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	9.32	14.83
KRG93197	Soybean	mitochondrion	9.45	11.49
KRH56532	Soybean	mitochondrion	9.45	11.49

Protein Annotations

EntrezGene:100808024	Gene3D:3.30.110.60	MapMan:35.1	EMBL:ACUP02010313	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G054400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MSG5	InterPro:IPR001890
InterPro:IPR035920	ProteinID:KRH02704.1	EnsemblPlants:KRH02705	ProteinID:KRH02705	ProteinID:KRH02705.1	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF7	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI000233E0D5	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:4127973..4132617

Molecular Weight (calculated)

90509.3 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.672

Length

794 amino acids

Sequence
(BLAST)

001: MALQPIPLNC SSSTPCSYSS LHFLKFRVSC SNQTSQLDTP QRVKVANKTK NSSHRPSFLH QIQDKWSLKL GSQREKFPWQ EQKHEVEQQQ QIEEEKEEKK
101: REQFQNQKKP SASNFQFPKR VSPWAQAINP SSALLDSESD DSEDEEDNED VKGKALQHNS IGSVREERKG MASEVSSNEA ERVNGERKKR RSNTELAERT
201: IPEHELRRLR KIALRMMERF DVGVKGITQE LVASVHQKWR DAEVVKFKFG IPLSAHMKKA HQILESKIGG IVIWRSGSSI VLYRGMAYKL PCIENYKKVN
301: LAKENAVDHS LHVGNGSDGQ ASVNETVGTA ESVIQESAEY LKDMSEEELM EMCDLNHLLD ELGPRFKDWT GRQPLPVDAD LLPAVVPGYK TPFRLLPYRI
401: RPCLTNKEMT NFRRLARTTA PHFALGRNRE LQGLARAMVK LWETSAIAKI AIKRGVPNTC NDRMAEELRK LTGGTLLSRN KEYIVFYRGN DFLPPVVTNT
501: LNERQKLTLL QQDEEDKARQ IASSITVSNS KAAQVPLIAG TLTETRAATT NWGHQPSKQE IENMIRDSAM NKLSALVKHH EKKLALAKSK FRKAEKALAK
601: VQRDLDPADI PSDLETLTNE ERFLFRKIGL SMKPYLLLGR RDVYAGTIEN MHLHWKYREL VKLIVKGRNS AQVKHISISL EAESGGVLVS VDKDTRGHHT
701: IIVYRGKNYF SPRVVRPKNL LTRRQALARS VELQRREALK HHISDLEERI GLLKSELEDM KNGKEIEDSK TLYPALENPV SSDDDLEELN IFFP

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.