Factsheet for VIT_11s0016g02100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P05570_001	Banana	cytosol	24.77	63.66
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	6.79	60.61
Bra024130.1-P	Field mustard	cytosol	43.44	59.91
CDY30199	Canola	cytosol	43.21	59.59
KRH02705	Soybean	plastid	51.7	57.56
Solyc07g039500.2.1	Tomato	plastid	49.89	54.31
PGSC0003DMT400056675	Potato	cytosol, plastid	50.23	54.28
CDY46704	Canola	plastid	46.83	52.87
AT4G29750.1	Thale cress	plastid	48.53	51.01
Os09t0363100-01	Rice	plastid	48.19	44.98
EER96635	Sorghum	plastid	48.08	44.18
Zm00001d020230_P006	Maize	plastid	47.29	43.36
TraesCS5B01G190100.1	Wheat	plastid	47.17	42.86
TraesCS5A01G194600.1	Wheat	plastid	46.72	42.45
HORVU5Hr1G057460.1	Barley	nucleus, plastid	47.17	41.58
VIT_14s0006g02670.t01	Wine grape	mitochondrion	8.71	40.74
TraesCS5D01G197600.1	Wheat	plastid	41.63	40.71
VIT_05s0020g04770.t01	Wine grape	plastid	40.72	39.91
VIT_17s0000g03610.t01	Wine grape	plastid	33.03	35.18
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	15.61	34.41
VIT_10s0092g00060.t01	Wine grape	nucleus	8.48	27.88
VIT_14s0066g01910.t01	Wine grape	cytosol	32.47	27.49
VIT_12s0035g00830.t01	Wine grape	nucleus	7.58	20.24
VIT_05s0102g00700.t01	Wine grape	plastid	8.48	18.03
VIT_14s0066g00360.t01	Wine grape	nucleus	9.62	7.97

Protein Annotations

EntrezGene:100247581	wikigene:100247581	MapMan:16.12.2.1.3	Gene3D:3.30.110.60	ProteinID:CCB51439	ProteinID:CCB51439.1
ncoils:Coil	UniProt:F6HGV6	EMBL:FN595756	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	EntrezGene:LOC100247581	wikigene:LOC100247581	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF7	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
TIGR:TC58497	UniParc:UPI00021081EF	ArrayExpress:VIT_11s0016g02100	EnsemblPlantsGene:VIT_11s0016g02100	EnsemblPlants:VIT_11s0016g02100.t01	unigene:Vvi.25780
RefSeq:XP_002279505	RefSeq:XP_002279505.2	InterPro:YhbY_like_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:1695374..1701068

Molecular Weight (calculated)

100151.0 Da

IEP (calculated)

7.899

GRAVY (calculated)

-0.587

Length

884 amino acids

Sequence
(BLAST)

001: MALSPSPSNL HLHLLLQPQA HYSNTFRTLK FNCSCSYHSI QVDTQQVKVP LKTTKAKRKP RPSFFEQIRD KWSLKINSPR EKFPWQEQAE ETQNSSGVVV
101: PDSEVIDSSV GSPVSSASES RFVSVPCIHE SKPRNPRLVS EPEISQNSCE QGVNVVGFGS HRASVDEWSK SFQKEVDSDG KFEGEGVEVD EIPIGVLGTE
201: KTEIEMGDAN VSLNEKPPGG DEDFGNFEGF SGNSSLIELP WKRREGLQPV ERDGWGRRNT RMAERMVPEH ELRRLKNIAL RMLERIKVGA AGVTQSLVDA
301: IHEKWRKDEV VKLKFEGPSS CNMKRTHEIL ETRTGGLVIW RTGSSVVLYR GMAYKLHCVQ SYIKQERDNV NISEYSQDAA NVIIQDIGVK DIVKTTESVI
401: SDSARYLKDL SEEELMDLSE LNHLLDELGP RFKDWSGREP LPVDADLLPS VVHEYKPPFR LLPYGMRHCL RNREMTFIRR LARTMPPHFA LGRSRELQGL
501: AMAMVKLWER SAIAKIAIKR GVQNTCNDRM AEELKNLTGG TLVSRNKDYI VFYRGNDFLP PHVMEALKER RKLRDLQQDE EEQARHRASA LIDSKARSAK
601: GPLVAGTLAE TLAATSRWGS EPSEEDVGKM IRDSALARHA SLVRYVGKKL AHAKAKLKKT EKALRKVQED LEPAELPMDL ETLSDEERFL FRKIGLSMKP
701: FLLLGTRGIF DGTVENMHLH WKYRELVKII VKGKNFAQVK HIAISLEAES GGVLVSVDRT PKGYAIIVYR GKNYQRPHAL RPKNLLTKRQ ALARSIELQR
801: HEALKHHISD LEERIKLLKS LPEEMKTGNG IDDKAFYSRL DGTYSTDEDM EEDEGEEAYL EIYGSEDKGS NIQNKELLLE GGSI

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.