Factsheet for VIT_14s0006g02670.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0092g00060.t01	Wine grape	nucleus	21.69	15.24
KRH01727	Soybean	plastid	57.14	14.46
AT5G16180.1	Thale cress	endoplasmic reticulum	50.79	13.33
EES13710	Sorghum	plastid	43.39	11.26
TraesCS7D01G553500.1	Wheat	plastid	42.86	11.11
TraesCS7B01G481800.1	Wheat	cytosol, plastid	42.86	11.11
VIT_05s0102g00700.t01	Wine grape	plastid	24.34	11.06
Os08t0360100-01	Rice	plastid	42.33	11.03
VIT_12s0035g00830.t01	Wine grape	nucleus	19.05	10.88
TraesCS7A01G557100.1	Wheat	cytosol, plastid	41.27	10.85
Zm00001d032373_P004	Maize	plastid	42.86	10.42
GSMUA_Achr9P19190_001	Banana	plastid	41.8	10.06
VIT_17s0000g03610.t01	Wine grape	plastid	38.62	8.8
CDX85512	Canola	golgi	50.79	8.76
VIT_11s0016g02100.t01	Wine grape	plastid	40.74	8.71
Bra023555.1-P	Field mustard	golgi	50.26	8.64
CDY38130	Canola	golgi	50.26	8.61
VIT_05s0020g04770.t01	Wine grape	plastid	38.62	8.09
VIT_14s0066g01910.t01	Wine grape	cytosol	40.21	7.28
VIT_14s0066g00360.t01	Wine grape	nucleus	22.22	3.94
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	7.94	3.74
HORVU1Hr1G001270.1	Barley	cytosol, nucleus	1.59	2.46
KRH70401	Soybean	plastid	5.29	1.7

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	ProteinID:CCB57703	ProteinID:CCB57703.1	UniProt:F6HSR2	EMBL:FN596245
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920
PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF10	InterPro:RNA-binding_CRM	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI00021085BF	ArrayExpress:VIT_14s0006g02670	EnsemblPlantsGene:VIT_14s0006g02670	EnsemblPlants:VIT_14s0006g02670.t01	InterPro:YhbY_like_sf

Description

No Description!

Coordinates

chr14:-:20653101..20654465

Molecular Weight (calculated)

21643.4 Da

IEP (calculated)

10.715

GRAVY (calculated)

-0.522

Length

189 amino acids

Sequence
(BLAST)

001: MPSKAFSLLP FAGKLLSGRR GVFDGVIEGL HQHWKHREIV KVITMQRSFS QVLYTAKLLE SESGGVLVSI DKLKEGHAII IYRGKNYRRP IKLVPKNLLT
101: KREALNRSLE MQRIGSLKFF AYQRQQAISD LKLKLADLQK GSRRIDQRES EKFTKHEPPD VAYHESYFQG VKRCGYAIRG ESSAHHPPS

Best Arabidopsis Sequence Match ( AT5G16180.1 )
(BLAST)

001: MRNGINILSY PRFLSFCEVF VLLLCNFSDN PKLQTFTQML NSLFLSARAF PSLITNSSSR RAKSSQFDQF RENRGVSDAA IKVPTAPWMK GPLLLRPDEI
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF

Arabidopsis Description

CRS1Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF10]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.