Factsheet for Bra023555.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
golgi 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85512	Canola	golgi	97.18	97.54
AT5G16180.1	Thale cress	endoplasmic reticulum	51.0	77.92
VIT_14s0006g02670.t01	Wine grape	mitochondrion	8.64	50.26
KRH01727	Soybean	plastid	34.09	50.2
PGSC0003DMT400067878	Potato	plastid	32.27	44.26
Solyc02g086200.1.1	Tomato	plastid	32.18	44.14
KRH70401	Soybean	plastid	23.45	43.95
TraesCS7A01G557100.1	Wheat	cytosol, plastid	27.0	41.31
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	3.64	40.4
EES13710	Sorghum	plastid	26.64	40.25
HORVU1Hr1G001270.1	Barley	cytosol, nucleus	4.45	40.16
TraesCS7D01G553500.1	Wheat	plastid	26.45	39.92
TraesCS7B01G481800.1	Wheat	cytosol, plastid	26.45	39.92
GSMUA_Achr9P19190_001	Banana	plastid	28.09	39.36
Os08t0360100-01	Rice	plastid	25.82	39.17
Zm00001d032373_P004	Maize	plastid	26.73	37.84
Bra024130.1-P	Field mustard	cytosol	19.0	32.61
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	4.27	30.92
Bra037586.1-P	Field mustard	plastid	22.64	30.48
Bra001704.1-P	Field mustard	plastid	22.55	29.52
Bra011945.1-P	Field mustard	mitochondrion	4.91	27.98
Bra033883.1-P	Field mustard	mitochondrion	20.45	25.98
Bra036865.1-P	Field mustard	plastid	19.73	25.23
Bra034894.1-P	Field mustard	mitochondrion	6.73	22.91
Bra039123.1-P	Field mustard	plastid	20.36	22.6
Bra000492.1-P	Field mustard	mitochondrion	6.09	18.93
Bra015127.1-P	Field mustard	plastid	6.09	15.4
Bra036994.1-P	Field mustard	nucleus	9.64	14.3
Bra033017.1-P	Field mustard	plastid	5.91	13.49
Bra025285.1-P	Field mustard	plastid	6.0	12.43

Protein Annotations

MapMan:16.12.2.1.1.8	Gene3D:3.30.110.60	EnsemblPlantsGene:Bra023555	EnsemblPlants:Bra023555.1	EnsemblPlants:Bra023555.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	InterPro:IPR001890
InterPro:IPR035920	UniProt:M4E452	PFAM:PF01985	PFAM:PF02485	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF10	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	TMHMM:TMhelix	UniParc:UPI00025436CF
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

AT5G16180 (E=5e-290) CRS1, ATCRS1 | CRS1 (ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1); RNA splicing factor, transesterification mechanism

Coordinates

chrA02:+:3909327..3915236

Molecular Weight (calculated)

127079.0 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.449

Length

1100 amino acids

Sequence
(BLAST)

0001: MGIIDQKIKK GEEHLMISKP LRLILFQSGR HVLRSLFFVT GFLIGVFLYL QLKAFHMSTP KTEQPLWSTV LFHHSTMMEI KQVLQTQELQ HDMSDQELFT
0101: KVSSLSSPSS SPSSSSWFGR MHNNDEKMVV KVAFMFMTGG ALPLAALWDK FFKGHEGFYS IYVHTNPSFQ DSYPETSVFY SRRIPSQPVY WGTSSMVDAE
0201: KRLLANALLD ESNQRFVLLS DSCIPLFDFT TIYDYLTGTN LSFIGSFDDP RKSGRGRYNP KMYPQINVTH WRKGSQWFST TRELALHILA DTFYYKIFDQ
0301: HCKPPCYMDE HYIPTLIHMF HGEMSANRTL TWVDWSRVGP HPGRVIWPDI TDEFLNRIRF TEECAYYSRD GENTTTSKCF LFARKFTEDT LEPLLRIYPL
0401: VLGSEHSKVQ TLLMLTPLFV SVRPLPSLTT ISSLNPNQNP PHTSKAPNFN QFNENPKPPD NAIKVPTAPW MKGPIFLPPD ELINTSHHHK STRKQNAEEK
0501: TFKALNRRES GVRGSKAMKK IVRSVEKLDD YGGEFESLGG VVEEDEKRRR RRMPWEREEE KFILRRRKKE RVLTTADLIL DEGLLKRLRL EGSKMREWVN
0601: VRKAGVTETV VNDIRSVWEE NELAMVRFDV PLCRNMERAQ EILELKTGGL VVLSKKEFLV VYRGPLSDSS VCVKEGGDEI SSSLYVREGE RLLNGLGPRY
0701: VDWWMRRPFP VDADLLPQVV DGYRTPSRRC PPNTRAKLSD QELTYLRNVA QALPFHFVLG RNHGLQGLAS AILKLWEKCV IAKIAIKWGA LNTNNEEMAD
0801: ELKHLTGGVL ILRNKYLIIL FRGKDFLSDE VADLVDDRER LLRRYQHFEE TRRESDIEIS EVVADGEQLE ETSKTGTLFE FQELQRKFGE MEMGNLETEA
0901: EKVKLDKELK SQEHKLSILK SKIEKTTTEL LKLNSLWKPS EPDDDIEILT NEERECLRRI GLKMNSSLVL GRRGVFNGVM EGLHQHWKHR EVAKVITMQK
1001: LFSRVVYTAK SLEAESNGVL ISIEKLKEGH AILMYRGRNY KRPSSKLMAQ NLLTKRKALQ RSVLMQRLGS LKFFAYQRER AIEDLKLSLV KLQGSASELC

Best Arabidopsis Sequence Match ( AT5G16180.1 )
(BLAST)

001: MRNGINILSY PRFLSFCEVF VLLLCNFSDN PKLQTFTQML NSLFLSARAF PSLITNSSSR RAKSSQFDQF RENRGVSDAA IKVPTAPWMK GPLLLRPDEI
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF

Arabidopsis Description

CRS1Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF10]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.