Factsheet for Bra034894.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34540	Canola	mitochondrion	98.76	98.46
AT4G13070.1	Thale cress	mitochondrion	81.73	76.97
VIT_10s0092g00060.t01	Wine grape	nucleus	60.06	72.12
PGSC0003DMT400032783	Potato	mitochondrion	55.73	64.98
KRH07419	Soybean	cytosol	46.13	57.09
KRH41679	Soybean	mitochondrion	62.23	54.18
EES12394	Sorghum	mitochondrion	56.66	54.14
Os06t0304500-01	Rice	mitochondrion	58.2	54.02
Zm00001d025706_P002	Maize	mitochondrion	56.35	53.85
KRH60382	Soybean	mitochondrion	61.61	53.64
TraesCS7B01G128100.1	Wheat	mitochondrion	55.73	53.41
TraesCS7D01G222900.1	Wheat	mitochondrion	55.11	52.98
TraesCS7A01G219200.1	Wheat	mitochondrion	55.11	52.98
Bra011945.1-P	Field mustard	mitochondrion	30.65	51.3
GSMUA_Achr9P12700_001	Banana	mitochondrion	59.13	50.93
Solyc01g105090.2.1	Tomato	plastid	56.66	48.8
Bra000492.1-P	Field mustard	mitochondrion	38.39	35.03
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	51.39	33.27
Bra015127.1-P	Field mustard	plastid	32.2	23.91
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	10.22	21.71
Bra033017.1-P	Field mustard	plastid	31.58	21.16
Bra025285.1-P	Field mustard	plastid	31.27	19.02
Bra024130.1-P	Field mustard	cytosol	24.15	12.17
Bra037586.1-P	Field mustard	plastid	23.84	9.42
Bra001704.1-P	Field mustard	plastid	24.46	9.4
Bra033883.1-P	Field mustard	mitochondrion	25.08	9.35
Bra036865.1-P	Field mustard	plastid	22.91	8.6
Bra039123.1-P	Field mustard	plastid	24.77	8.07
Bra036994.1-P	Field mustard	nucleus	16.72	7.29
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	2.17	7.07
Bra023555.1-P	Field mustard	golgi	22.91	6.73

Protein Annotations

EnsemblPlants:Bra034894.1	EnsemblPlants:Bra034894.1-P	EnsemblPlantsGene:Bra034894	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
ncoils:Coil	PANTHER:PTHR31426	PANTHER:PTHR31426:SF3	PFAM:PF01985	PFscan:PS51295	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000254563A	UniProt:M4F1E8	MapMan:35.1	:

Description

AT4G13070 (E=2e-109) | group II intron splicing factor CRS1-related

Coordinates

chrA08:-:5591246..5592507

Molecular Weight (calculated)

38147.1 Da

IEP (calculated)

10.409

GRAVY (calculated)

-0.888

Length

323 amino acids

Sequence
(BLAST)

001: MMFAVGCAKG IANQLFRNPR WRSGLFVHHL QFPNYTVYTK QRPFVEVPHG SASSNQNVFE YCCRRHMSNS TVELRTEDNV VRFSFSNNTK SVPMRTEKKW
101: KRAKSSRKAK VNELRFYRLK AKKKMNSPNP EVRIRYKLEK AKRKEEWLIE KLRKYDVPKT PAEAYDPETL TEEEQHYLKR TGEKRKNFVL VGRRGVFGGV
201: VLNMHLHWKK HETVKVICKP CNKPGQIHEY AEELARLSKG IVIDVKPNNA IVLYRGKNYV RPQVMSPVDT LSKDKALEKY RYEQSLEHTS DFIEKLEKEL
301: EEYHKYVARY KKKDEVDSKS KAV

Best Arabidopsis Sequence Match ( AT4G13070.1 )
(BLAST)

001: MLALGYAKEI AQRFLRNPKW TSRFFLLHYQ SSNYSSYVKS RPFLQVQCKS ASFDVSQAQR WNLFAYDGLF SRRYLSNSTI ELRTDDNVVR FAFNNVSSSG
101: NNVVPTRKEK KWKRAKLSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KSPAEPYDPE SLTEEEQHYL KRTGEKRKNF
201: VLVGRRGVFG GVVLNLHLHW KKHETVKVIC KPCNKPGQVH EYAEELARLS KGIVIDVKPN NTIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH
301: TSEFIEKLEK ELEEYHKYVA RHKKKKDEEA EKKKEAVSKS KVV

Arabidopsis Description

At4g13070 [Source:UniProtKB/TrEMBL;Acc:Q67YJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.