Factsheet for Bra036865.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29740	Canola	plastid	99.07	97.04
CDY16286	Canola	plastid	92.21	92.1
AT4G14510.1	Thale cress	plastid	78.84	74.75
Bra033883.1-P	Field mustard	mitochondrion	62.56	62.12
KRG92332	Soybean	plastid	52.79	54.37
KRH34465	Soybean	plastid	49.88	53.29
VIT_05s0020g04770.t01	Wine grape	plastid	54.77	52.22
Solyc09g083350.2.1	Tomato	mitochondrion	53.49	52.1
PGSC0003DMT400002898	Potato	mitochondrion	53.49	52.1
TraesCS4A01G150500.1	Wheat	plastid	43.02	49.8
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	48.26	48.88
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	5.47	47.47
TraesCS4B01G161000.1	Wheat	plastid	45.58	45.96
TraesCS4D01G150700.1	Wheat	plastid	45.47	45.89
Zm00001d007572_P001	Maize	plastid	44.65	45.61
Os11t0592400-00	Rice	plastid	46.16	44.81
OQU83762	Sorghum	cytosol, nucleus, plastid	44.53	44.8
HORVU7Hr1G052190.1	Barley	plastid	46.05	44.64
Bra024130.1-P	Field mustard	cytosol	33.02	44.31
Bra037586.1-P	Field mustard	plastid	32.09	33.78
Bra001704.1-P	Field mustard	plastid	32.44	33.21
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	5.47	30.92
GSMUA_Achr8P05580_001	Banana	plasma membrane	20.93	30.87
Bra039123.1-P	Field mustard	plastid	31.86	27.65
Bra011945.1-P	Field mustard	mitochondrion	6.05	26.94
Bra036994.1-P	Field mustard	nucleus	21.28	24.7
Bra034894.1-P	Field mustard	mitochondrion	8.6	22.91
Bra000492.1-P	Field mustard	mitochondrion	8.6	20.9
Bra023555.1-P	Field mustard	golgi	25.23	19.73
Bra015127.1-P	Field mustard	plastid	9.88	19.54
Bra033017.1-P	Field mustard	plastid	8.72	15.56
Bra025285.1-P	Field mustard	plastid	8.72	14.12

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	EnsemblPlantsGene:Bra036865	EnsemblPlants:Bra036865.1	EnsemblPlants:Bra036865.1-P	InterPro:CFM3
ncoils:Coil	GO:GO:0000003	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009791
GO:GO:0009987	GO:GO:0048316	InterPro:IPR001890	InterPro:IPR035920	UniProt:M4F705	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI00025451E2	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

AT3G23070 (E=1e-249) | RNA binding

Coordinates

chrA01:+:12590767..12594095

Molecular Weight (calculated)

97331.8 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.742

Length

860 amino acids

Sequence
(BLAST)

001: MAMNSIRHLY PAATTAVDSL GSSFCKLHGA TSLRFLRYSP SISLGDVRRF GFCSTRKVKL CRGSGRDENW NRTQKQNQLK PVLNHRKGET FSDLGVTSGE
101: NGDGGSSTME RIVEKLKKFG FVDDDQFQDE EIEHERRFVE EEEGNVRNRR GGFSEESPFG AYGGDGEVKF PWEKVSSKEK EKEKEELVNG VWTAKKESRY
201: SLAEMTLPQA ELNRLRNLMF RTKSKMRVKG AGVTQAVVDA IQEKWKSSEI VRLKIEGTNA LNMRRMHELL ERKTGGLVIW RSGTSIALYK YKNDTYRDAS
301: VPMNKQIYRR AGTSPSSLPT SRVDHSVEQV HHPQIEKEAT NVGNEDRTSH QEVEYEDEIN ELLEGLGQRY TDWQGGYPLP VDADMLPGIV PGYEPPFRVL
401: PYGVRSTLGQ KEATSLRRLG KVLPPHFALG RSRQLQGLAT AMVKLWEKSL IAKVALKRGV QLTTSERMAE DIKRLTGGML LSRNKDFLVF YRGKSFLSPE
501: VAEALVEKER LARTFQDEEE QARLRASSGL VVPRVKANQN HLVSTGTLGE TLDAASKWGR NLDDDDHVEE VKQEAEKLRS ANLVRKLERK LAFAEKRLMK
601: AERALAKVEE SLKPSEHRTD TEGITEEERF MFQKLGLRMK AFLLLGRRGV FDGTVENMHL HWKYRELVKI LVKAKTFEGA QKVALALEAE SGGILVSVDK
701: VSKGYAIIVY RGKDYKRPSE LRPKNLLTKR KALARSVELQ RRQEQVELVK DKGSQVLYNK LDMAYSSSDE ETEETDGEGD DIYLDTYDED GEEGGVQAKG
801: SLSDVEFDSE DEDWDSDESE TEFDDDSASS ATPFDAEPTS STTPEATFVD QQKEERHLQS

Best Arabidopsis Sequence Match ( AT4G14510.1 )
(BLAST)

001: MAINSSHHFC PMTTTTTTSA KFVDSLGSSF CKFHGTSSSI SLRSYRFGFS FMKNVKRLSC EGSSSSSSSR NENWNRTQKQ NQFRPSKVVL NRRKDERFSD
101: LGVISGENSS RSGDVGGGSG SSSTMEKIVE KLKKYGFVDE DQFQDKEVEQ ERRIEKSSVE ERFYVEERRG GFSEESPFGV YGGNDEVKFP WEKVSSMEKK
201: ELVNGEWTAK KESRYSLAEM TLSEFELNRL RNVMFRTKSK MRVTGAGVTQ AVVDAIQEKW KGSEIVRLKI EGSSALNMRR MHEILERKTG GLVIWRSGTS
301: IALYNYKGGS NRDGSGNMNK QVYRRAERLP SSLPTSTVDQ SVQLVNLPQL EKEPTVVGNK DRTSPQEVEY EDEINELLEG LGPRYTDWQG GYPLPVDADL
401: LPGIVPGYEP PFRALPYGVR STLGTKEATS LRRIATVLPP HFALGRSRQL QGLATAMVKL WQKSLIAKVA LKRGVQLTTS ERMAEDIKRL TGGMLLSRNK
501: DFLVFYRGKS FLSLEVGEAL MEKEMLVRTL QDEEEQARLR ASSALVVPSI KANQQLARTL QDKEEQARPS ALVLPSTKAN QNLVSAGTLG ETLDATGKWG
601: KNLDNDDHVE EMKQEVEKVR SAKLVRKLER KLAFAEKKLL KAERALAKVE ESLKPAEQRT DLEGITEEER FMFQKLGLKM KAFLLLGRRG VFDGTVENMH
701: LHWKYRELIK ILVKAKTLEG AQKVAMALEA ESGGILVSVD KISKGYAVIV YRGKDYKRPT TLRPKNLLTK RKALARSLEL QKREALIKHI EAIQTRSEQL
801: RAEIEQVELV KDKGDETLYD KLDMAYSSDE ETEETDGEED DVYLDTYEDE GEDDEEGGIQ ANGSLSETDV EFGSDESDTD FGDNSASSTT PETTFVELQN
901: EELDVQP

Arabidopsis Description

CFM3BCRM-domain containing factor CFM3B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.