Factsheet for Bra015127.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27892	Canola	plastid	96.78	96.56
CDY00840	Canola	plastid	93.1	91.63
AT3G25440.1	Thale cress	plastid	79.31	77.7
VIT_12s0035g00830.t01	Wine grape	nucleus	48.05	63.14
GSMUA_Achr2P05820_001	Banana	cytosol	44.6	59.33
KRH69093	Soybean	mitochondrion	54.25	52.8
PGSC0003DMT400071187	Potato	mitochondrion	54.48	51.08
Solyc06g082990.2.1	Tomato	mitochondrion	53.79	50.65
Zm00001d003196_P001	Maize	mitochondrion	51.49	46.19
KRH71856	Soybean	nucleus	54.02	45.37
Os04t0492900-03	Rice	mitochondrion	49.66	45.09
TraesCS2B01G367400.1	Wheat	mitochondrion	49.66	44.91
KXG26557	Sorghum	mitochondrion	51.72	44.82
TraesCS2A01G349000.1	Wheat	mitochondrion	49.66	44.81
TraesCS2A01G366200.1	Wheat	mitochondrion	48.97	44.65
HORVU2Hr1G084980.4	Barley	plastid	50.8	39.32
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	49.43	37.33
Bra011945.1-P	Field mustard	mitochondrion	16.55	37.31
Bra034894.1-P	Field mustard	mitochondrion	23.91	32.2
Bra000492.1-P	Field mustard	mitochondrion	23.22	28.53
Bra033017.1-P	Field mustard	plastid	25.29	22.82
Bra025285.1-P	Field mustard	plastid	25.75	21.09
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	6.67	19.08
Bra024130.1-P	Field mustard	cytosol	17.47	11.86
Bra001704.1-P	Field mustard	plastid	20.92	10.83
Bra037586.1-P	Field mustard	plastid	20.23	10.77
Bra033883.1-P	Field mustard	mitochondrion	20.92	10.51
Bra036865.1-P	Field mustard	plastid	19.54	9.88
Bra039123.1-P	Field mustard	plastid	20.23	8.88
Bra036994.1-P	Field mustard	nucleus	13.33	7.83
Bra023555.1-P	Field mustard	golgi	15.4	6.09
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	1.38	6.06

Protein Annotations

EnsemblPlants:Bra015127.1	EnsemblPlants:Bra015127.1-P	EnsemblPlantsGene:Bra015127	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
ncoils:Coil	PANTHER:PTHR31426	PANTHER:PTHR31426:SF5	PFAM:PF01985	PFscan:PS51295	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0002540B73	UniProt:M4DF55	MapMan:35.1	:

Description

AT3G25440 (E=2e-138) | RNA binding

Coordinates

chrA07:-:3286007..3287603

Molecular Weight (calculated)

50278.0 Da

IEP (calculated)

8.726

GRAVY (calculated)

-0.787

Length

435 amino acids

Sequence
(BLAST)

001: MVIPTAARVW TSMSVLLRRN SRQLWSLASS PSSNSIPPRT ISSGNLLCKV LLNESCKRPA WYVGYLTSSW FHSTPARETT TSNPQNSLSQ DGVASTKPKR
101: KNLKGKRAVV RWLKFFRWKK KKEVERMTAE EKILNKLRKA RKKEERLVET MKKLEPSESS ETTHDPEILT PEEHFFYLKM GLKCKNYVPV GRRGIYQGVI
201: LNMHLHWKKH QTLQVVIKTF TPEEVNEIAI ELARLTGGIV LDVHEGNTII MYRGKNYVQP PTEIMSPRVT LPRKKALDKS KCRDALRAVR KYIPRLEQEL
301: ELLQAQCEAT KGDSPSVVKI DDDQRSEELK KIIERSQECF EDEQEEEEDL VTDSDISDIF ETDSESENDK AERPLFLQEF EKFPAINSKV GEEEEDFGDP
401: GKTKSRDDKE DESPDFDEVD KMFLRAASLL KKKRR

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.