Factsheet for GSMUA_Achr2P05820_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00830.t01	Wine grape	nucleus	66.97	66.16
Os04t0492900-03	Rice	mitochondrion	70.03	47.81
KRH69093	Soybean	mitochondrion	64.22	46.98
TraesCS2B01G367400.1	Wheat	mitochondrion	67.28	45.74
Zm00001d003196_P001	Maize	mitochondrion	67.58	45.57
KXG26557	Sorghum	mitochondrion	69.72	45.42
CDY27892	Canola	plastid	60.24	45.18
TraesCS2A01G366200.1	Wheat	mitochondrion	65.75	45.07
TraesCS2A01G349000.1	Wheat	mitochondrion	66.36	45.02
Bra015127.1-P	Field mustard	plastid	59.33	44.6
PGSC0003DMT400071187	Potato	mitochondrion	63.0	44.4
Solyc06g082990.2.1	Tomato	mitochondrion	62.69	44.37
CDY00840	Canola	plastid	59.94	44.34
AT3G25440.1	Thale cress	plastid	57.8	42.57
KRH71856	Soybean	nucleus	64.53	40.73
HORVU2Hr1G084980.4	Barley	plastid	67.58	39.32
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	66.06	37.5
GSMUA_Achr9P12700_001	Banana	mitochondrion	29.66	25.87
GSMUA_Achr3P16860_001	Banana	mitochondrion	34.56	25.28
GSMUA_Achr8P05570_001	Banana	cytosol	19.57	18.6
GSMUA_Achr9P19780_001	Banana	nucleus	32.11	18.55
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	24.16	9.31
GSMUA_Achr3P26360_001	Banana	plastid	21.41	9.11
GSMUA_Achr9P19190_001	Banana	plastid	18.04	7.52
GSMUA_Achr10P...	Banana	plastid	19.88	6.51
GSMUA_Achr8P05580_001	Banana	plasma membrane	2.45	1.37

Protein Annotations

EnsemblPlants:GSMUA_Achr2P05820_001	EnsemblPlants:GSMUA_Achr2T05820_001	EnsemblPlantsGene:GSMUA_Achr2G05820_001	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
PANTHER:PTHR31426	PANTHER:PTHR31426:SF5	PFAM:PF01985	PFscan:PS51295	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI0002957B06	UniProt:M0S5H3	MapMan:35.1	:	:	:

Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G05820_001]

Coordinates

chr2:-:10782516..10785339

Molecular Weight (calculated)

37705.1 Da

IEP (calculated)

5.721

GRAVY (calculated)

-0.733

Length

327 amino acids

Sequence
(BLAST)

001: MTAEEKILYK MRKAKRKEER LVEALKKIEP ADSSEPTHDP EILTPEEHFY LLKMGHKCKN YVPVGRRGIF QGVILNMHLH WKKHQTLKVI VKTFTPEEVR
101: EIAAELARLS GGIVLDIHEE NTIIMYRGKN YAQPPTEIMS PKVTLSRKKA LDKSKYKDAL RAVRRYIPKL HQDLGDLQEQ MKREGESKSK TTEEAVSNAV
201: DNRIISDCQM KSSEVLDVLE DGNSEPVEDD SLMESSSWSE TEDLSDMFET DSDMEVMEKS ERPLYLDEVE KFPSNIDEEP KDFEEHLRQI AAASKRIDLS
301: TKDVKLADLD AVDKIFLRAS SLLKKRR

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.