Factsheet for GSMUA_Achr3P16860_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011945.1-P	Field mustard	mitochondrion	29.53	68.39
KRH29618	Soybean	nucleus	38.26	60.21
Solyc09g005270.2.1	Tomato	mitochondrion	48.77	59.56
PGSC0003DMT400030768	Potato	mitochondrion	48.77	59.24
TraesCS3B01G562100.1	Wheat	mitochondrion	51.45	58.08
TraesCS3D01G505800.1	Wheat	mitochondrion	51.01	58.02
HORVU3Hr1G110360.1	Barley	mitochondrion	51.68	57.75
Zm00001d042043_P001	Maize	mitochondrion	50.11	56.85
VIT_05s0102g00700.t01	Wine grape	plastid	52.35	56.25
Bra000492.1-P	Field mustard	mitochondrion	44.52	56.21
AT2G28480.1	Thale cress	mitochondrion	46.76	56.18
EES02081	Sorghum	mitochondrion	50.56	55.8
Os01t0958400-02	Rice	mitochondrion	50.34	53.96
CDY31205	Canola	mitochondrion	44.74	53.76
KRH24621	Soybean	mitochondrion	51.01	53.4
PGSC0003DMT400039655	Potato	mitochondrion, plastid	47.2	53.28
CDX83289	Canola	mitochondrion	44.3	53.23
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	51.45	53.0
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	46.09	49.88
CDY15751	Canola	mitochondrion, plastid, vacuole	32.66	42.07
GSMUA_Achr9P12700_001	Banana	mitochondrion	31.32	37.33
GSMUA_Achr2P05820_001	Banana	cytosol	25.28	34.56
GSMUA_Achr9P19780_001	Banana	nucleus	25.28	19.96
GSMUA_Achr8P05570_001	Banana	cytosol	14.09	18.31
GSMUA_Achr3P26360_001	Banana	plastid	19.91	11.59
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	19.91	10.48
GSMUA_Achr9P19190_001	Banana	plastid	15.88	9.04
GSMUA_Achr10P...	Banana	plastid	16.33	7.31
GSMUA_Achr8P05580_001	Banana	plasma membrane	5.15	3.95

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr3G16860_001	EnsemblPlants:GSMUA_Achr3P16860_001	EnsemblPlants:GSMUA_Achr3T16860_001	InterPro:IPR001890	InterPro:IPR035920
UniProt:M0SFA2	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	InterPro:RNA-binding_CRM
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000296BB7C	InterPro:YhbY_like_sf	SEG:seg	:

Description

CRS1/YhbY domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G16860_001]

Coordinates

chr3:-:18085537..18089448

Molecular Weight (calculated)

50816.4 Da

IEP (calculated)

9.278

GRAVY (calculated)

-0.758

Length

447 amino acids

Sequence
(BLAST)

001: MGSRVALFLP KLRKRSPVSP LDSLRTWCVA RSLSYASVNF VLSKDRSPVV SLGPFHVRWV KRSLSHGSVN LVLNDGKPRF ETHEIEQPKK GKYRTKKRLK
101: LQRKRERRKR REASKTDPRR IRPKGKKNKV RFPTAEDRIK YKMEKAKIKE ALLVEKLKKY EISKVEGPEI KPQVLTGEER FYLKKMAQKK SNYVPIGRRG
201: IFGGVILNMH LHWKKHETVK VICRPCKTGQ VHEYAKELAR LSGGIPIQII GSDTIIFYRG KNYVQPEVMS PIDTLSKKKA LEKSKYEQSL DTVRHFIAIS
301: EKELELYYRH VALYGDPNFR NADLVYGDGK QGPQARISEK PPSTENISIN STSHDASASL FDEENFSSTG DDDMSDDEIC SSASDDMSEH FCDEESVCLS
401: HDNSSTSLSE AESDSDDGQL GAVEIDSEGE PVLDFEVNSE DEENTAC

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.