Subcellular Localization
min:
: max
Winner_takes_all: vacuole, plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83289 | Canola | mitochondrion | 61.1 | 56.99 |
| CDY31205 | Canola | mitochondrion | 61.1 | 56.99 |
| Bra011945.1-P | Field mustard | mitochondrion | 31.12 | 55.96 |
| AT2G28480.1 | Thale cress | mitochondrion | 59.65 | 55.65 |
| Solyc09g005270.2.1 | Tomato | mitochondrion | 49.28 | 46.72 |
| PGSC0003DMT400030768 | Potato | mitochondrion | 49.28 | 46.47 |
| KRH29618 | Soybean | nucleus | 33.72 | 41.2 |
| VIT_05s0102g00700.t01 | Wine grape | plastid | 48.99 | 40.87 |
| PGSC0003DMT400039655 | Potato | mitochondrion, plastid | 46.4 | 40.66 |
| KRH24621 | Soybean | mitochondrion | 49.57 | 40.28 |
| Solyc12g014280.1.1 | Tomato | mitochondrion, plastid | 45.24 | 38.01 |
| TraesCS3B01G562100.1 | Wheat | mitochondrion | 42.07 | 36.87 |
| Zm00001d042043_P001 | Maize | mitochondrion | 41.5 | 36.55 |
| TraesCS3D01G505800.1 | Wheat | mitochondrion | 41.21 | 36.39 |
| EES02081 | Sorghum | mitochondrion | 42.36 | 36.3 |
| HORVU3Hr1G110360.1 | Barley | mitochondrion | 41.5 | 36.0 |
| Os01t0958400-02 | Rice | mitochondrion | 40.92 | 34.05 |
| TraesCS3A01G499000.2 | Wheat | mitochondrion, nucleus | 41.21 | 32.95 |
| GSMUA_Achr3P16860_001 | Banana | mitochondrion | 42.07 | 32.66 |
| CDY49592 | Canola | mitochondrion | 23.92 | 25.54 |
| CDY34540 | Canola | mitochondrion | 23.63 | 25.31 |
| CDY27892 | Canola | plastid | 23.92 | 19.04 |
| CDY00840 | Canola | plastid | 24.21 | 19.0 |
| CDY66660 | Canola | plastid | 21.61 | 16.59 |
| CDX83707 | Canola | mitochondrion, nucleus, plastid | 21.33 | 14.68 |
| CDY13722 | Canola | mitochondrion, nucleus, plastid | 21.04 | 14.6 |
| CDX92233 | Canola | cytosol | 3.75 | 13.13 |
| CDY70711 | Canola | nucleus | 7.78 | 10.51 |
| CDY03983 | Canola | cytosol | 21.33 | 10.11 |
| CDX95528 | Canola | cytosol | 13.26 | 9.73 |
| CDY30199 | Canola | cytosol | 16.71 | 9.05 |
| CDY29740 | Canola | plastid | 19.31 | 7.63 |
| CDY10350 | Canola | plastid | 19.02 | 7.61 |
| CDY10696 | Canola | plastid | 18.73 | 7.59 |
| CDY46704 | Canola | plastid | 17.0 | 7.54 |
| CDX75965 | Canola | plastid | 17.58 | 7.26 |
| CDY16286 | Canola | plastid | 17.87 | 7.2 |
| CDY51940 | Canola | plastid | 17.29 | 7.15 |
| CDY18518 | Canola | plastid | 16.14 | 6.95 |
| CDY49049 | Canola | plastid | 17.87 | 6.35 |
| CDY37526 | Canola | plastid | 17.29 | 6.12 |
| CDY38130 | Canola | golgi | 14.99 | 4.71 |
| CDX85512 | Canola | golgi | 14.7 | 4.65 |
| CDX95529 | Canola | plastid | 2.88 | 3.3 |
Protein Annotations
| EnsemblPlants:CDY15751 | EnsemblPlantsGene:GSBRNA2T00089993001 | ncoils:Coil | PANTHER:PTHR31426 | PANTHER:PTHR31426:SF2 | ProteinID:CDY15751 |
| ProteinID:CDY15751.1 | SEG:seg | UniParc:UPI0004EC63F7 | UniProt:A0A078FRH6 | MapMan:35.2 | : |
Description
BnaC04g15730DBnaC04g15730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRH6]
Coordinates
chrLK032057:-:188413..190370
Molecular Weight (calculated)
39337.2 Da
IEP (calculated)
10.339
GRAVY (calculated)
-0.716
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MALHARGLGL GLGFALGSWV LSGFPASTRS LQRASSSLLR YSYPLLISSR SLPQSQELAY TTSTFLLPTI STVSRPICRR NFSHGTVNLV ISEGEPKFKT
101: RELDPPNKWK WLTKKRLKLK RKKEQEKRNS ANRKDPRRLT IKGKKNKRKL ANPEERIKNK LERAKIKEAS LIEKLKRYEV AKAQGPEVRP HEITGEERFY
201: LKKMGQKRLT SDGTSATVRR SDELAELSGG VPVNIVGDDT IIFYRGKGYV QPKAYEKSKY EQSLDSVRHL IAVAEKELEL YYRHVALYDD LSNRNPLSIL
301: DYSSGSCGHH LNKLYMSCSD TESESEDEEL CKLDNNGSSS SLKGRVV
101: RELDPPNKWK WLTKKRLKLK RKKEQEKRNS ANRKDPRRLT IKGKKNKRKL ANPEERIKNK LERAKIKEAS LIEKLKRYEV AKAQGPEVRP HEITGEERFY
201: LKKMGQKRLT SDGTSATVRR SDELAELSGG VPVNIVGDDT IIFYRGKGYV QPKAYEKSKY EQSLDSVRHL IAVAEKELEL YYRHVALYDD LSNRNPLSIL
301: DYSSGSCGHH LNKLYMSCSD TESESEDEEL CKLDNNGSSS SLKGRVV
001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN
Arabidopsis Description
At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.