Factsheet for VIT_05s0102g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011945.1-P	Field mustard	mitochondrion	32.45	69.95
KRH29618	Soybean	nucleus	45.91	67.25
Solyc09g005270.2.1	Tomato	mitochondrion	56.49	64.21
PGSC0003DMT400030768	Potato	mitochondrion	56.73	64.13
Bra000492.1-P	Field mustard	mitochondrion	54.33	63.84
AT2G28480.1	Thale cress	mitochondrion	56.49	63.17
KRH24621	Soybean	mitochondrion	62.98	61.36
CDY31205	Canola	mitochondrion	54.81	61.29
CDX83289	Canola	mitochondrion	54.33	60.75
PGSC0003DMT400039655	Potato	mitochondrion, plastid	55.77	58.59
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	55.29	55.69
EES02081	Sorghum	mitochondrion	52.64	54.07
TraesCS3D01G505800.1	Wheat	mitochondrion	50.96	53.94
Zm00001d042043_P001	Maize	mitochondrion	50.96	53.81
TraesCS3B01G562100.1	Wheat	mitochondrion	50.96	53.54
HORVU3Hr1G110360.1	Barley	mitochondrion	50.96	53.0
GSMUA_Achr3P16860_001	Banana	mitochondrion	56.25	52.35
Os01t0958400-02	Rice	mitochondrion	51.44	51.32
VIT_10s0092g00060.t01	Wine grape	nucleus	32.21	49.81
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	51.2	49.08
CDY15751	Canola	mitochondrion, plastid, vacuole	40.87	48.99
VIT_12s0035g00830.t01	Wine grape	nucleus	25.72	32.33
VIT_14s0006g02670.t01	Wine grape	mitochondrion	11.06	24.34
VIT_14s0066g00360.t01	Wine grape	nucleus	26.68	10.4
VIT_17s0000g03610.t01	Wine grape	plastid	20.19	10.12
VIT_05s0020g04770.t01	Wine grape	plastid	19.47	8.98
VIT_11s0016g02100.t01	Wine grape	plastid	18.03	8.48
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	7.45	7.73
VIT_14s0066g01910.t01	Wine grape	cytosol	19.23	7.66

Protein Annotations

EntrezGene:100250974	wikigene:100250974	Gene3D:3.30.110.60	MapMan:35.1	EMBL:AM450596	ProteinID:CAN67658
ProteinID:CAN67658.1	ProteinID:CCB59854	ProteinID:CCB59854.1	ncoils:Coil	UniProt:F6HYU0	EMBL:FN596500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920
EntrezGene:LOC100250974	wikigene:LOC100250974	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF2
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000210A511	ArrayExpress:VIT_05s0102g00700	EnsemblPlantsGene:VIT_05s0102g00700
EnsemblPlants:VIT_05s0102g00700.t01	RefSeq:XP_002266278	RefSeq:XP_002266278.2	RefSeq:XP_010650597.1	InterPro:YhbY_like_sf	SEG:seg

Description

No Description!

Coordinates

chr5:+:22606733..22611834

Molecular Weight (calculated)

47659.5 Da

IEP (calculated)

9.129

GRAVY (calculated)

-0.905

Length

416 amino acids

Sequence
(BLAST)

001: MAKALFRILR RASPKPSIFQ PISCHPESIF SLPKHPPPPT PSWVSRNLSH GSVNLVISRG KLKFETHETD PPKKDKWKTK KRLKMQRKKE KQKRKAANKR
101: DPRRLSVKGK KKKQRFANAE ERIKFKLEKA RIKEALLIER LKRYEVPKLQ GPIVQPVNLT GEERFYMKKM AQKRSNYVPV GRRGVFGGVI LNMHMHWKKH
201: ETVKVICKPC KPGQVHEYAN EIARLSGGTP IQIIGDDTII FYRGKNYVQP EVMSPIDTLS KKRALEKSKY EQSLESVRRF IAIAEKELEL YYRHIALYGD
301: PSDRNPTSIF DSPSKYTNES GKEMPRRQDF DVSTNGFSFS PGHLPDTESD STDEELGPSL SASEDDLEDE NSSVIEFDSD DEDEDEDEDD DDFDSDGEEC
401: AESFSVIQES SGTILG

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.