Factsheet for VIT_14s0066g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66660	Canola	plastid	28.3	66.81
Bra033017.1-P	Field mustard	plastid	29.15	64.52
CDY13722	Canola	mitochondrion, nucleus, plastid	29.71	63.4
CDX83707	Canola	mitochondrion, nucleus, plastid	29.8	63.1
Bra025285.1-P	Field mustard	plastid	30.74	61.77
AT3G27550.2	Thale cress	mitochondrion	30.83	60.15
PGSC0003DMT400015748	Potato	nucleus, plastid	29.62	59.29
KRH56532	Soybean	mitochondrion	35.61	58.19
KRG93197	Soybean	mitochondrion	35.52	58.04
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	29.99	55.85
Os05t0145300-01	Rice	mitochondrion	28.4	54.11
GSMUA_Achr9P19780_001	Banana	nucleus	28.58	53.89
HORVU1Hr1G019580.2	Barley	plastid	28.12	52.45
TraesCS1A01G108800.1	Wheat	mitochondrion	28.02	49.02
TraesCS1B01G108100.1	Wheat	mitochondrion	28.02	49.02
TraesCS1D01G090300.1	Wheat	mitochondrion	27.84	48.77
CDY03983	Canola	cytosol	32.8	47.81
Zm00001d010884_P001	Maize	mitochondrion	28.21	46.67
Zm00001d024823_P001	Maize	mitochondrion	27.93	45.57
EES17695	Sorghum	plastid	28.77	44.82
VIT_10s0092g00060.t01	Wine grape	nucleus	9.0	35.69
VIT_12s0035g00830.t01	Wine grape	nucleus	9.84	31.72
VIT_05s0102g00700.t01	Wine grape	plastid	10.4	26.68
VIT_14s0006g02670.t01	Wine grape	mitochondrion	3.94	22.22
VIT_05s0020g04770.t01	Wine grape	plastid	8.34	9.87
VIT_11s0016g02100.t01	Wine grape	plastid	7.97	9.62
VIT_17s0000g03610.t01	Wine grape	plastid	7.4	9.52
VIT_14s0066g01910.t01	Wine grape	cytosol	8.81	9.0
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	2.44	6.48

Protein Annotations

EntrezGene:100249251	wikigene:100249251	EntrezGene:100254349	wikigene:100254349	MapMan:14.1.4	MapMan:15.5.17
Gene3D:3.30.310.150	ProteinID:CCB58458	ProteinID:CCB58458.1	ncoils:Coil	UniProt:F6HUU0	EMBL:FN596252
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR003441
InterPro:IPR035920	InterPro:IPR036093	EntrezGene:LOC100249251	wikigene:LOC100249251	EntrezGene:LOC100254349	wikigene:LOC100254349
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF01985	PFAM:PF02365	PFscan:PS51005	PFscan:PS51295
PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF101941	SUPFAM:SSF75471
UniParc:UPI0002108EB0	ArrayExpress:VIT_14s0066g00360	EnsemblPlantsGene:VIT_14s0066g00360	EnsemblPlants:VIT_14s0066g00360.t01	RefSeq:XP_002272412	RefSeq:XP_002272412.2
RefSeq:XP_002272446	RefSeq:XP_002272446.1	InterPro:YhbY_like_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:26874263..26886112

Molecular Weight (calculated)

121120.0 Da

IEP (calculated)

5.930

GRAVY (calculated)

-1.005

Length

1067 amino acids

Sequence
(BLAST)

0001: MARTWVVDSR GIARKVKNAT QSFASQIKDC GANRECPNCH HRIDNSDVSH EWPGLPAGVK FDPSDVQLLE HLAAKCGVGN GKPHVLIDEF IPTLEEDKGI
0101: CYTHPENLPG AKKDGGSIHF FHRTTNAYAT GQRKRRKIHS LHGSTEEHVR WHKTGKTKPV IENGVQKGCK KIMVLYKSSK KGSKPDKSNW VMHQYHLGTE
0201: EDEREDEYVV SKVFYQPQKQ TETNDNIPVI EELDAVTSQT SPRTPKTTTP NPPRSEKSVF CANAGDDSTP HGSAQKAEFV GEASHPNPST DQIENNMEYP
0301: LWLAGESQAI EDADQNGLHD SLLCKEIFYP GAPHYDTGLN HGPVIGFSHN MNGIPGDHNA PCGIADLENL ELDTPPDFQL AAPFRMQVLS QKSKACDTGV
0401: KNVVSRRYVP LKCLSSNPIQ SSAGSEDCSS SISPWNGFSG WSRAMSTAGG RSMRSKVERR MRKESGKTLR EVRRAQKLRK KLMTDEERLI YNLRRAKKKV
0501: ALLLQKLKKY ELPELPAPRH DPELLTAEQL QAYKKIGFRN KNYVPVGVRG VFGGVVQNMH LHWKFHETVQ VCCDNFPKEK IKEMATMLAR LSGGIVINVH
0601: DVKTIIMFRG RNYRQPKNLI PINTLTKRKA TATKKAKEAA LFKARFEQAL DSQKLNIKKI EQQLRRMGVN PEDPVAMASI QRVASTFFNA IDKQEGSPYV
0701: FQGDKLFGAA PTEDLKLSEE PPVDSDQEEL DQFIAEIEDA ADKEWAVEEA AEKEELSKMR YWNREEFAGR FRRFDNPKNE DFDSDVRGAR GWNHTRGRQR
0801: TTDTDDEGND VSEGDEEWDS NDVRDLRTPE SDGDDSDEVH NEFTAPRMQS GKLDFGRAKN NNSKDFKRNA EEFRRKVDEE DSGSEDMLDD LENAMWESDA
0901: EEEHDSRTSR MASNDYRSSS DDDEHLHRIK RDSKNARNLV NDHENDADYS ESDEGQDEFR ESRIAKQKHG QISRVNNDQG FMRNAEANFS RNMIEEDSES
1001: ENMLSDSKVG MWESDDEGYS KVSKAISNDY QSGDEEEDYH ITKNETSKEK DKRMKTPKQV DETWDSD

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.