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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 4
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d024823_P001 Maize mitochondrion 86.42 90.52
Zm00001d010884_P001 Maize mitochondrion 84.96 90.23
Os05t0145300-01 Rice mitochondrion 63.36 77.5
HORVU1Hr1G019580.2 Barley plastid 61.75 73.95
TraesCS1D01G090300.1 Wheat mitochondrion 64.53 72.58
TraesCS1A01G108800.1 Wheat mitochondrion 64.23 72.13
TraesCS1B01G108100.1 Wheat mitochondrion 63.94 71.8
CDY66660 Canola plastid 40.44 61.28
Bra033017.1-P Field mustard plastid 42.34 60.17
CDY13722 Canola mitochondrion, nucleus, plastid 43.07 59.0
CDX83707 Canola mitochondrion, nucleus, plastid 43.21 58.73
Bra025285.1-P Field mustard plastid 44.53 57.44
AT3G27550.2 Thale cress mitochondrion 44.82 56.12
GSMUA_Achr9P19780_001 Banana nucleus 44.53 53.89
PGSC0003DMT400015748 Potato nucleus, plastid 40.73 52.35
Solyc07g047900.2.1 Tomato mitochondrion, nucleus 41.61 49.74
KRH56532 Soybean mitochondrion 45.4 47.63
KRG93197 Soybean mitochondrion 44.53 46.71
CDY03983 Canola cytosol 40.88 38.25
EES12394 Sorghum mitochondrion 14.6 29.59
VIT_14s0066g00360.t01 Wine grape nucleus 44.82 28.77
EES02081 Sorghum mitochondrion 14.01 23.7
KXG26557 Sorghum mitochondrion 16.64 22.71
KXG22496 Sorghum plastid 12.26 10.49
OQU83762 Sorghum cytosol, nucleus, plastid 12.12 9.71
EES13710 Sorghum plastid 9.64 9.07
EER96635 Sorghum plastid 11.82 8.42
OQU81723 Sorghum plastid 11.82 7.75
Protein Annotations
MapMan:35.1EntrezGene:8069484UniProt:C5Z001ncoils:CoilEnsemblPlants:EES17695ProteinID:EES17695
ProteinID:EES17695.3GO:GO:0000287GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0005488GO:GO:0005975GO:GO:0005986GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016740GO:GO:0016757GO:GO:0016787GO:GO:0050307InterPro:IPR001890
InterPro:IPR035920PFAM:PF01985PFscan:PS51295PANTHER:PTHR31426PANTHER:PTHR31426:SF4InterPro:RNA-binding_CRM
SMART:SM01103EnsemblPlantsGene:SORBI_3009G041600SUPFAM:SSF75471unigene:Sbi.20732UniParc:UPI000B8B95CBInterPro:YhbY_like_sf
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr9:+:3984906..3988527
Molecular Weight (calculated)
77960.0 Da
IEP (calculated)
9.370
GRAVY (calculated)
-1.165
Length
685 amino acids
Sequence
(BLAST)
001: MWVLRGLLRA ASPSLRRRCV PPLSLSTRSS STSSPPHSSR SLTRAFLRRD SSGRFAARGE AVAAGSAPAP AGLLAVGAGA DGAWRRAMST KGRSMRSKVE
101: KRMARETGRT QRELRRAVKL RKKLMTEDEK LIYNLRRAKK KVALLLQKLK KYELPDLPAP RHDPELLTAE QLQAYKKIGF RNRNYVPVGV RGVFGGVVQN
201: MHMHWKFHET VQVCCDNFPK EKIKEMAAML TRLSGGIVIN IHNTKTIIMF RGRNYRQPKN LIPFNTLTKR KALFKARFEQ ALESQKLNIK KIETQLRRKG
301: INPEDPVAMA SIQRVASTFF RAIDEQQGTP YIFRGDAQPS AGTSEIKEPR DEPSEDSDQE ELDRFISEIE SAAEKQWEEE EAAEKEESSR MRYWEREDVG
401: DRRGFNRSYE NSDYEDRGQG RYRREHDNNR RTSDARRWDD DSEFEASGEE WDSGDDRGNA LGFDKDRDST DEHPRRFGST RNEKSRSSRT QDFVPRGDVG
501: KGKGFNRSYG NSDVHDRGQG RHRRDNNNNE RTSDARRWDD DSEIEVSGEE WDSGDDSDNV LGLDNDIDTT DVHPRQFKST RNEKSRSSGR QSSIPGGFRG
601: SNRIPGNSVD ASDGTMFRGS NSDELDTEDD DLWDSDYKGG ETNSGAPKVN FPNFHSSSED SDDNRKSDGK IGKMKKNTDE SWDSD
Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)
001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD
Arabidopsis Description
RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.