CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038922_P001	Maize	extracellular	91.51	92.2
Os05t0551900-00	Rice	plastid	80.52	82.48
TraesCS1A01G376400.1	Wheat	plastid	72.66	81.51
HORVU1Hr1G083550.4	Barley	plasma membrane	78.4	81.03
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	77.28	79.46
TraesCS1B01G396800.2	Wheat	plastid	78.03	78.91
GSMUA_Achr3P26360_001	Banana	plastid	60.17	62.76
CDX95528	Canola	cytosol	36.58	61.95
CDX92233	Canola	cytosol	7.24	58.59
VIT_17s0000g03610.t01	Wine grape	plastid	59.43	57.35
Solyc03g119450.2.1	Tomato	nucleus	57.68	56.34
PGSC0003DMT400014644	Potato	plastid	57.43	55.83
KRH48490	Soybean	nucleus	54.81	55.5
KRH39182	Soybean	plastid	54.18	54.87
CDX75965	Canola	plastid	57.43	54.76
CDY51940	Canola	plastid	57.3	54.71
CDY18518	Canola	plastid	54.93	54.59
Bra001704.1-P	Field mustard	plastid	57.18	54.52
Bra037586.1-P	Field mustard	plastid	54.56	53.49
AT3G18390.1	Thale cress	plastid	56.55	53.42
KRH41639	Soybean	mitochondrion, plastid	48.44	53.37
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	9.11	48.03
CDX95529	Canola	plastid	16.35	43.23
EES13710	Sorghum	plastid	31.21	34.34
OQU83762	Sorghum	cytosol, nucleus, plastid	35.21	32.98
EER96635	Sorghum	plastid	35.96	29.94
EES12394	Sorghum	mitochondrion	10.99	26.04
OQU81723	Sorghum	plastid	31.71	24.31
EES02081	Sorghum	mitochondrion	10.74	21.23
KXG26557	Sorghum	mitochondrion	11.86	18.92
EES17695	Sorghum	plastid	10.49	12.26

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	UniProt:A0A1B6P9Y5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009719	GO:GO:0009737	InterPro:IPR001890
InterPro:IPR035920	EnsemblPlants:KXG22496	ProteinID:KXG22496	ProteinID:KXG22496.1	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	EnsemblPlantsGene:SORBI_3009G223200	SUPFAM:SSF75471
UniParc:UPI00081AE15F	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:56573111..56578304

Molecular Weight (calculated)

89761.0 Da

IEP (calculated)

6.041

GRAVY (calculated)

-0.596

Length

801 amino acids

Sequence
(BLAST)

001: MALSELPLHH SFRLSSRPNI HRLLPLRLLS SSPASRHVSS SSSSAAAASS PSSTGGNRTS PPSTSTGAPW LQKWAPSDPS RPVPPPAPVP SPTTSIDRIV
101: HRLRNLGLAS DDDDPSSVSA ATAAAAPPDG TERLGDLLDR SWARPDRQFA AASFDDAVLP WERDDEPMGS ARDEEDGVKR RRVKAPTLAE LTIEDEELRR
201: LRRLGMTLRD RITVPKAGVT TAVTEKIHDA WRKSELVRLK FHEDLAHDMK TAHELVERRT GGFIIWRSGS VMVVYRGSNY KRPLKSQALN GASSPVKGGD
301: GALFIPDASS PVENDNQSKD LAGQHANVSQ LNTQNTEDMT EEELEFNQML DELGPRFVDW WGTGILPVDA DLLPQTIPGY KTPYRVLPTG MRSTLTNAEL
401: TNLRKLARNL PCHFALGRNR NHQGLAAAIV KLWEKSLVVK IAVKRGIQNT NNKIMAEEIK NLTGGTLLLR NKFYIVIYRG KDFLPTSVAA VLAEREELTK
501: DIQNMEEQRR NILIAQPPDD GFDGHALVGT LAEFQEAQAR WGREVTAKEQ EEMKEASSRT EKQKLYRKLE HKLYIAQAKI HRAERLLSKI EASMVLADPC
601: DDQEMITDEE KSVFRRIGLR LKAYLPLGVR GVFDGVIENM HLHWKHREVV KLISKQKTLS FVEETARLLA YESGGILVAI ERVPKGYALI FYRGKNYRRP
701: INIRPRNLLT KAKALKRAVA MQRHEALSQH IDQLESNIKQ MKLDLGIEDY EEQDEDSSDS ENEYGMAVAS ASYDEDQDDF DESADEDDDY DDDVEDEEID
801: S

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.