CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92233	Canola	cytosol	8.94	65.66
CDX95528	Canola	cytosol	41.13	63.21
KRH48490	Soybean	nucleus	63.96	58.79
KRH39182	Soybean	plastid	63.55	58.41
GSMUA_Achr3P26360_001	Banana	plastid	55.85	52.86
VIT_17s0000g03610.t01	Wine grape	plastid	60.25	52.77
TraesCS1A01G376400.1	Wheat	plastid	51.03	51.96
Os05t0551900-00	Rice	plastid	55.02	51.15
CDY18518	Canola	plastid	56.12	50.62
Solyc03g119450.2.1	Tomato	nucleus	56.81	50.37
Bra037586.1-P	Field mustard	plastid	56.4	50.18
PGSC0003DMT400014644	Potato	plastid	56.67	50.0
CDY51940	Canola	plastid	57.08	49.46
CDX75965	Canola	plastid	57.08	49.4
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	10.32	49.34
HORVU1Hr1G083550.4	Barley	plasma membrane	52.54	49.29
Bra001704.1-P	Field mustard	plastid	56.81	49.17
AT3G18390.1	Thale cress	plastid	56.81	48.7
Zm00001d038922_P001	Maize	extracellular	53.23	48.68
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	52.13	48.65
KXG22496	Sorghum	plastid	53.37	48.44
TraesCS1B01G396800.2	Wheat	plastid	52.41	48.11
KRG92332	Soybean	plastid	39.61	34.49
KRH01727	Soybean	plastid	34.94	34.0
KRH02705	Soybean	plastid	36.86	33.75
KRH34465	Soybean	plastid	36.59	33.04
CDX95529	Canola	plastid	13.62	32.67
KRH70401	Soybean	plastid	23.52	29.13
KRG93409	Soybean	plastid	35.21	24.93
KRH07419	Soybean	cytosol	8.94	24.9
KRH60382	Soybean	mitochondrion	12.24	23.99
KRG93411	Soybean	plastid	34.11	23.98
KRH41679	Soybean	mitochondrion	11.69	22.91
KRH29618	Soybean	nucleus	8.67	22.18
KRH69093	Soybean	mitochondrion	11.55	18.79
KRH24621	Soybean	mitochondrion	10.87	18.5
KRH71856	Soybean	nucleus	11.28	15.83
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	10.73	15.63
KRG93197	Soybean	mitochondrion	11.42	12.71
KRH56532	Soybean	mitochondrion	11.42	12.71

Protein Annotations

EntrezGene:100776626	Gene3D:3.30.110.60	MapMan:35.1	UniProt:A0A0R0IGR6	EMBL:ACUP02004776	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G041700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890
InterPro:IPR035920	ProteinID:KRH41638.1	EnsemblPlants:KRH41639	ProteinID:KRH41639	ProteinID:KRH41639.1	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI0006ED577E	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3302155..3308279

Molecular Weight (calculated)

82706.9 Da

IEP (calculated)

8.963

GRAVY (calculated)

-0.466

Length

727 amino acids

Sequence
(BLAST)

001: MRLSMKSALL STLPPSSSVL LFSSYSKFKL KSPLGIPIRA LTSSSLPTTR DHDDLFDPLS LPAPQHLHKA TNAIERIALR LRNLGLASTT DLADAEDDFL
101: RREWLRPDQA LFPWDKGQEE DAEEPGEQQK EMLKKKNVNA STLAEQTLVE EELRRLRTLG MSLKEKITIP KAGLTRAVLD RIHRHWSNCE LVRLKFHEFL
201: AQNMKLAHQI VEHRTRGLVI WRSGSYMWVY RGKNYQGPVE SDATSMEKSE AVWWKGENMT PEEAEFNRML DGFGPRFVEW WGTGILPVDA DSLPPMVPGY
301: KTPLRLLPAG MRPQLTNDEL TNMRKLAKSL PCHFALGRNR NLQGLASAIL RLWEKSLVAK IGVKRGIVNT NNELMAQELK ALTGGTLLLR NKYYIVIYRG
401: KDFVPTSVAA VIAERQELTK QVQDVEEKVR CKALDSTPSG EDESTAQAGS LAEFYVAQAC WGRDISTEER ERMMQEVAKA KNAKLVKKIE CKLAVAQAKR
501: LRAEKLLAKI EASLLPVGPD YDKETITDEE RVMFRSVGLR MKAYLPLGIR GVFDGVIENM HLHWKHRELV KLITKQKTLA FVEDTARLLE YESGGILVAI
601: DKVPKGFSLI YYRGKNYRRP MTLRPRNLLT KAKALQRSVV MQRHEALSQH VTELGEKIEE MKKKLGLSQD LGTKDRWNVE DHNQIDHISE FTQSEEEYSD
701: GDDTDDRLTF CNEVPESEWL LPLPAAS

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.