CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18518	Canola	plastid	83.5	31.39
AT3G18390.1	Thale cress	plastid	73.93	26.42
CDY51940	Canola	plastid	72.28	26.1
CDX75965	Canola	plastid	71.62	25.83
GSMUA_Achr3P26360_001	Banana	plastid	46.2	18.23
VIT_17s0000g03610.t01	Wine grape	plastid	48.84	17.83
KRH39182	Soybean	plastid	43.89	16.81
Zm00001d038922_P001	Maize	extracellular	43.89	16.73
Os05t0551900-00	Rice	plastid	42.9	16.62
KRH48490	Soybean	nucleus	43.23	16.56
KXG22496	Sorghum	plastid	43.23	16.35
Solyc03g119450.2.1	Tomato	nucleus	43.56	16.1
PGSC0003DMT400014644	Potato	plastid	43.56	16.02
TraesCS1B01G396800.2	Wheat	plastid	40.59	15.53
HORVU1Hr1G083550.4	Barley	plasma membrane	39.6	15.48
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	39.27	15.28
TraesCS1A01G376400.1	Wheat	plastid	33.99	14.43
KRH41639	Soybean	mitochondrion, plastid	32.67	13.62
CDY10696	Canola	plastid	23.43	8.29
CDY10350	Canola	plastid	22.77	7.96
CDY29740	Canola	plastid	21.78	7.52
CDY46704	Canola	plastid	19.14	7.41
CDY16286	Canola	plastid	20.79	7.32
CDY49049	Canola	plastid	20.79	6.45
CDY37526	Canola	plastid	20.79	6.42
CDY30199	Canola	cytosol	12.54	5.93
CDX85512	Canola	golgi	19.14	5.29
CDY38130	Canola	golgi	18.81	5.17
CDX83289	Canola	mitochondrion	3.63	2.96
CDY31205	Canola	mitochondrion	3.63	2.96
CDY15751	Canola	mitochondrion, plastid, vacuole	3.3	2.88
CDY34540	Canola	mitochondrion	2.97	2.78
CDY49592	Canola	mitochondrion	2.97	2.77
CDY27892	Canola	plastid	3.63	2.52
CDX95528	Canola	cytosol	3.63	2.33
CDY00840	Canola	plastid	3.3	2.26
CDX92233	Canola	cytosol	0.66	2.02
CDY70711	Canola	nucleus	1.32	1.56
CDY66660	Canola	plastid	2.31	1.55
CDY13722	Canola	mitochondrion, nucleus, plastid	2.31	1.4
CDX83707	Canola	mitochondrion, nucleus, plastid	2.31	1.39
CDY03983	Canola	cytosol	2.31	0.96

Protein Annotations

EnsemblPlants:CDX95529	EnsemblPlantsGene:GSBRNA2T00101354001	Gene3D:3.30.110.60	GO:A0A078E4V4	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	PFAM:PF01985	PFscan:PS51295	ProteinID:CDX95529	ProteinID:CDX95529.1
SEG:seg	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EF061A	MapMan:35.2	:

Description

BnaC01g34210D

Coordinates

chrLK031889:-:1016012..1017299

Molecular Weight (calculated)

34507.8 Da

IEP (calculated)

7.244

GRAVY (calculated)

-0.813

Length

303 amino acids

Sequence
(BLAST)

001: MALVATKFTE MPLRSSLPLT STSRYHSSPS LHALLFDSLS AAKPSRRVLR PFSSLRTSER SSNNGSRNNR RLDHRDSKPN PPWTISGLRR HPPRRNRTNI
101: TAEEKDRGQS AIEKIVLRLR NLGLASDEEE DAEDNGGDVK AVTGEERLGD LLKREWVKPD VILAEGEEES EVEDDDVLLP WEKKNEEEHA AERIEGDGVM
201: ALKKRRVRAP SLAELTVEDS ELRRLRGEGM YLRVKINIPK AGLTQAVMEK INDTWRKEEL VRLKFHEVFA RDMKTAHEIV ELASNWWNGD MEGRKCNGGL
301: SWA

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.