Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036994.1-P | Field mustard | nucleus | 96.5 | 33.47 |
| CDX92233 | Canola | cytosol | 9.34 | 24.24 |
| CDX95528 | Canola | cytosol | 31.13 | 16.91 |
| CDY10350 | Canola | plastid | 53.7 | 15.92 |
| CDY10696 | Canola | plastid | 52.92 | 15.89 |
| AT3G23070.1 | Thale cress | plastid | 51.36 | 14.98 |
| TraesCS4A01G150500.1 | Wheat | plastid | 41.25 | 14.27 |
| CDY30199 | Canola | cytosol | 35.41 | 14.2 |
| KRG92332 | Soybean | plastid | 44.75 | 13.77 |
| CDY16286 | Canola | plastid | 44.36 | 13.24 |
| GSMUA_Achr3P29330_001 | Banana | cytosol, nucleus, plastid | 43.58 | 13.19 |
| CDY29740 | Canola | plastid | 44.75 | 13.1 |
| VIT_05s0020g04770.t01 | Wine grape | plastid | 45.91 | 13.08 |
| Zm00001d007572_P001 | Maize | plastid | 42.8 | 13.06 |
| CDY34540 | Canola | mitochondrion | 16.34 | 12.96 |
| CDY49592 | Canola | mitochondrion | 16.34 | 12.92 |
| OQU83762 | Sorghum | cytosol, nucleus, plastid | 42.41 | 12.75 |
| TraesCS4D01G150700.1 | Wheat | plastid | 42.02 | 12.68 |
| PGSC0003DMT400002898 | Potato | mitochondrion | 43.19 | 12.57 |
| Solyc09g083350.2.1 | Tomato | mitochondrion | 43.19 | 12.57 |
| Os11t0592400-00 | Rice | plastid | 43.19 | 12.53 |
| TraesCS4B01G161000.1 | Wheat | plastid | 41.25 | 12.43 |
| KRH34465 | Soybean | plastid | 38.91 | 12.42 |
| HORVU7Hr1G052190.1 | Barley | plastid | 42.8 | 12.4 |
| CDY46704 | Canola | plastid | 35.41 | 11.62 |
| CDY31205 | Canola | mitochondrion | 15.95 | 11.02 |
| CDX83289 | Canola | mitochondrion | 15.95 | 11.02 |
| CDY18518 | Canola | plastid | 31.52 | 10.05 |
| CDY51940 | Canola | plastid | 32.3 | 9.89 |
| CDX75965 | Canola | plastid | 32.3 | 9.88 |
| CDY27892 | Canola | plastid | 15.56 | 9.17 |
| CDY00840 | Canola | plastid | 15.18 | 8.82 |
| CDY66660 | Canola | plastid | 14.4 | 8.19 |
| CDY15751 | Canola | mitochondrion, plastid, vacuole | 10.51 | 7.78 |
| CDY49049 | Canola | plastid | 28.4 | 7.48 |
| CDY13722 | Canola | mitochondrion, nucleus, plastid | 14.4 | 7.4 |
| CDX83707 | Canola | mitochondrion, nucleus, plastid | 14.4 | 7.34 |
| CDY37526 | Canola | plastid | 28.02 | 7.34 |
| CDX85512 | Canola | golgi | 28.4 | 6.66 |
| CDY38130 | Canola | golgi | 26.85 | 6.26 |
| CDY03983 | Canola | cytosol | 14.4 | 5.05 |
| GSMUA_Achr8P05580_001 | Banana | plasma membrane | 6.23 | 2.74 |
| CDX95529 | Canola | plastid | 1.56 | 1.32 |
Protein Annotations
| MapMan:35.1 | GO:A0A078JYT5 | UniProt:A0A078JYT5 | EnsemblPlants:CDY70711 | ProteinID:CDY70711 | ProteinID:CDY70711.1 |
| InterPro:CFM3 | ncoils:Coil | GO:GO:0000373 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00006904001 |
| InterPro:IPR001890 | InterPro:IPR035920 | PFAM:PF01985 | PFscan:PS51295 | PANTHER:PTHR31846 | PANTHER:PTHR31846:SF13 |
| InterPro:RNA-binding_CRM | SUPFAM:SSF75471 | UniParc:UPI0004EE1815 | InterPro:YhbY_like_sf | SEG:seg | : |
Description
BnaAnng34720DBnaAnng34720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYT5]
Coordinates
chrLK043022:-:1545..2622
Molecular Weight (calculated)
29710.0 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.675
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDFEKLTG GILLSRNEDG LVFYRGKNFL SPEIDEALVE QEKLVRSLQE EEEARLEEGS SALIVISTEP SNELVYAGTL GKTRDLTGKK LLKAECGLVK
101: VEEYLQPAEQ IADIESITGE ERFICRKRGS NMKAFLLIGR RGVFNGTVEN KHLHWKYGEL VKRKALARSI KLQRHEGCIK ETLAMHARAE RMGVETELTE
201: KIEDFRRVKK LLTDVRFEPV SSRKTLLPSR EQMRTKELLL EKHLEENEEQ KRRKRKR
101: VEEYLQPAEQ IADIESITGE ERFICRKRGS NMKAFLLIGR RGVFNGTVEN KHLHWKYGEL VKRKALARSI KLQRHEGCIK ETLAMHARAE RMGVETELTE
201: KIEDFRRVKK LLTDVRFEPV SSRKTLLPSR EQMRTKELLL EKHLEENEEQ KRRKRKR
001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S
Arabidopsis Description
CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.