CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27892	Canola	plastid	92.53	93.81
Bra015127.1-P	Field mustard	plastid	91.63	93.1
AT3G25440.1	Thale cress	plastid	78.28	77.93
VIT_12s0035g00830.t01	Wine grape	nucleus	47.74	63.75
GSMUA_Achr2P05820_001	Banana	cytosol	44.34	59.94
KRH69093	Soybean	mitochondrion	54.07	53.47
PGSC0003DMT400071187	Potato	mitochondrion	55.66	53.02
Solyc06g082990.2.1	Tomato	mitochondrion	54.75	52.38
Zm00001d003196_P001	Maize	mitochondrion	52.04	47.42
KXG26557	Sorghum	mitochondrion	52.71	46.41
Os04t0492900-03	Rice	mitochondrion	50.23	46.35
KRH71856	Soybean	nucleus	53.62	45.75
TraesCS2B01G367400.1	Wheat	mitochondrion	49.55	45.53
TraesCS2A01G349000.1	Wheat	mitochondrion	49.32	45.23
TraesCS2A01G366200.1	Wheat	mitochondrion	48.64	45.07
HORVU2Hr1G084980.4	Barley	plastid	50.45	39.68
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	49.09	37.67
CDY34540	Canola	mitochondrion	23.3	31.79
CDY49592	Canola	mitochondrion	23.3	31.69
CDX92233	Canola	cytosol	7.01	31.31
CDY31205	Canola	mitochondrion	23.08	27.42
CDX83289	Canola	mitochondrion	23.08	27.42
CDY66660	Canola	plastid	25.34	24.78
CDY15751	Canola	mitochondrion, plastid, vacuole	19.0	24.21
CDX83707	Canola	mitochondrion, nucleus, plastid	25.79	22.62
CDY13722	Canola	mitochondrion, nucleus, plastid	25.34	22.4
CDX95528	Canola	cytosol	17.19	16.07
CDY03983	Canola	cytosol	25.79	15.57
CDY70711	Canola	nucleus	8.82	15.18
CDY30199	Canola	cytosol	16.74	11.54
CDY10350	Canola	plastid	21.49	10.96
CDY10696	Canola	plastid	21.04	10.86
CDY51940	Canola	plastid	20.59	10.85
CDX75965	Canola	plastid	20.59	10.83
CDY16286	Canola	plastid	20.59	10.57
CDY18518	Canola	plastid	19.23	10.55
CDY29740	Canola	plastid	20.81	10.48
CDY46704	Canola	plastid	16.97	9.58
CDY37526	Canola	plastid	19.68	8.87
CDY49049	Canola	plastid	19.46	8.81
CDX85512	Canola	golgi	14.71	5.93
CDY38130	Canola	golgi	14.48	5.8
CDX95529	Canola	plastid	2.26	3.3

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:A0A078EFH3	EnsemblPlants:CDY00840	ProteinID:CDY00840	ProteinID:CDY00840.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00110770001
InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF5
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EF17D1	InterPro:YhbY_like_sf	SEG:seg

Description

BnaCnng00400D

Coordinates

chrLK031922:+:480318..481928

Molecular Weight (calculated)

51199.7 Da

IEP (calculated)

6.732

GRAVY (calculated)

-0.881

Length

442 amino acids

Sequence
(BLAST)

001: MVIPTAARVS TSMSVLLRRN YRQLWSLASS PSSNSIPPRT ISSGNLLCKV LLNESCQEPA WKARYFLTSS SWFHSTPSHE TTSNPENSSS QDGVSPTKPK
101: RKKLKGKRAV VRWLKFFRWK KKKEVERMTA EEKILNKLRK ARKKEERLVE TMKKLEPSES SETTHDPEIL TPEEHFYFLK MGLKCKNYVP VGRRGIYQGV
201: ILNMHLHWKK HQTLQVVIKT FTPEEVNEIA VELARLTGGI VLDVHEGDTI IMYRGKNYVQ PPTEIMSPRV TLPRKKALDK SKCRDALRAV RKYIPRLEQE
301: LELLQAQCEA SKGDSPSVVK IDDDDDDDQR SEELKKIIER SQECFEDEKE EEEEELATDS DLSDIFETDS ESENDKAERP LFLEEFEKFP AINNKVGEDE
401: EEDFGDPRKT KSRDDKEDES PDFDEVDKMF LRAASLLKKK RR

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.