Factsheet for PGSC0003DMT400071187

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082990.2.1	Tomato	mitochondrion	94.61	95.02
VIT_12s0035g00830.t01	Wine grape	nucleus	49.78	69.79
GSMUA_Achr2P05820_001	Banana	cytosol	44.4	63.0
KRH69093	Soybean	mitochondrion	54.96	57.05
CDY00840	Canola	plastid	53.02	55.66
CDY27892	Canola	plastid	51.94	55.28
Bra015127.1-P	Field mustard	plastid	51.08	54.48
AT3G25440.1	Thale cress	plastid	51.51	53.83
Os04t0492900-03	Rice	mitochondrion	51.94	50.31
Zm00001d003196_P001	Maize	mitochondrion	51.94	49.69
KXG26557	Sorghum	mitochondrion	52.8	48.8
KRH71856	Soybean	nucleus	54.31	48.65
TraesCS2B01G367400.1	Wheat	mitochondrion	50.0	48.23
TraesCS2A01G349000.1	Wheat	mitochondrion	50.0	48.13
TraesCS2A01G366200.1	Wheat	mitochondrion	49.35	48.01
HORVU2Hr1G084980.4	Barley	plastid	50.43	41.64
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	50.22	40.45
PGSC0003DMT400032783	Potato	mitochondrion	23.49	39.35
PGSC0003DMT400030768	Potato	mitochondrion	24.57	30.98
PGSC0003DMT400039655	Potato	mitochondrion, plastid	23.28	27.27
PGSC0003DMT400015748	Potato	nucleus, plastid	23.92	20.83
PGSC0003DMT400069622	Potato	cytosol	7.97	14.74
PGSC0003DMT400002898	Potato	mitochondrion	19.61	10.31
PGSC0003DMT400014644	Potato	plastid	17.24	9.71
PGSC0003DMT400056675	Potato	cytosol, plastid	16.59	9.41
PGSC0003DMT400067878	Potato	plastid	15.52	8.98
PGSC0003DMT400003527	Potato	plastid	18.75	8.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400071187	EnsemblPlantsGene:PGSC0003DMG401027685	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil	PANTHER:PTHR31426
PANTHER:PTHR31426:SF5	PFAM:PF01985	PFscan:PS51295	PGSC:PGSC0003DMG401027685	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI0002948802	UniProt:M1CNC1	MapMan:35.1	:	:

Description

Uncharacterized CRM domain-containing protein, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG401027685]

Coordinates

chr6:-:57951353..57954837

Molecular Weight (calculated)

53970.5 Da

IEP (calculated)

7.344

GRAVY (calculated)

-0.775

Length

464 amino acids

Sequence
(BLAST)

001: MLRRGFFFPA TLCKSRQLHH LLCCRFIFQP VLPHSVPQQT SVFNAVCKVF EREVIVGPRL IVQKWDFGLI DSGRYYCTAG KAGEGETSNG GGNDVVAESS
101: GEFKEDKIKR KKLKGKRQVV KWLKFFRWKK KKEFQRMTAE ERILFKLRKA RKKEERLVEA LRKVEPKEIS EATHDPEILT PEEHFYFLKM GEKCKNYVPV
201: GRRGIYQGVI LNMHLHWKKH QTLKVVVKTF SPEEVKEIAV ELARLSGGIV LDIQDDDTII MYRGKNYSQP PTEIMSPRST LSRKKALDKS KYRDSLRAVE
301: RYIPRLEQDL ELLRLQAENE TDAPNKNQEV GLEKFHPEHR SDQQIEASDK LKRIMVENEE QGEENDSMVD TDICSDSEDL SDIFETDSEE EHEEKAEEPL
401: YLDVFEKFPV QSNGDEQDFE EHLRQISSNL RKEKSPGKDV DTPGLDEVDK IILQAASLLK KRKR

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.