Factsheet for PGSC0003DMT400032783

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0092g00060.t01	Wine grape	nucleus	71.12	73.23
Solyc01g105090.2.1	Tomato	plastid	96.39	71.2
KRH07419	Soybean	cytosol	56.68	60.15
CDY34540	Canola	mitochondrion	65.34	55.86
Bra034894.1-P	Field mustard	mitochondrion	64.98	55.73
CDY49592	Canola	mitochondrion	65.34	55.69
Os06t0304500-01	Rice	mitochondrion	67.87	54.02
TraesCS7B01G128100.1	Wheat	mitochondrion	65.7	54.01
Zm00001d025706_P002	Maize	mitochondrion	65.7	53.85
EES12394	Sorghum	mitochondrion	65.7	53.85
TraesCS7A01G219200.1	Wheat	mitochondrion	64.98	53.57
TraesCS7D01G222900.1	Wheat	mitochondrion	64.62	53.27
AT4G13070.1	Thale cress	mitochondrion	65.34	52.77
KRH60382	Soybean	mitochondrion	70.4	52.56
KRH41679	Soybean	mitochondrion	68.95	51.48
GSMUA_Achr9P12700_001	Banana	mitochondrion	66.43	49.07
PGSC0003DMT400030768	Potato	mitochondrion	44.77	33.7
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	58.84	32.67
PGSC0003DMT400039655	Potato	mitochondrion, plastid	43.32	30.3
PGSC0003DMT400071187	Potato	mitochondrion	39.35	23.49
PGSC0003DMT400015748	Potato	nucleus, plastid	36.1	18.76
PGSC0003DMT400069622	Potato	cytosol	15.52	17.13
PGSC0003DMT400056675	Potato	cytosol, plastid	28.52	9.66
PGSC0003DMT400014644	Potato	plastid	28.16	9.47
PGSC0003DMT400067878	Potato	plastid	26.71	9.23
PGSC0003DMT400002898	Potato	mitochondrion	26.71	8.38
PGSC0003DMT400003527	Potato	plastid	26.71	7.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400032783	EnsemblPlantsGene:PGSC0003DMG400012587	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF3	PFAM:PF01985	PFscan:PS51295	PGSC:PGSC0003DMG400012587	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0002958C08	UniProt:M1AY15	MapMan:35.1	:

Description

CFM6 [Source:PGSC_GENE;Acc:PGSC0003DMG400012587]

Coordinates

chr1:+:81821667..81825087

Molecular Weight (calculated)

32546.0 Da

IEP (calculated)

10.633

GRAVY (calculated)

-0.810

Length

277 amino acids

Sequence
(BLAST)

001: MNTLLLPSSL TSGSREIVLK LLHARRFSSP SIELNTEKGV VRFRFGQEIG KRGGLIKVKR VVKKFKMSKK AKLNELRLYR LKAKKKMRSP NPEVRIRYKL
101: EKAKRKEAWL IEKLRNFEVP KAPDEPHDPE ILTEEEKFYL KRTGEKKKNY VPVGRRGVFG GVVLNMHLHW KKHETVKVVC RPCKPGQIHE YAAELTRLSR
201: GTVIDIKPDN TIIFYRGKNY VQPDVMSPPD TLSKDKALEK YRYEQSLEHT SQFIEKMEKE LVEYHEYLAQ KRKKENS

Best Arabidopsis Sequence Match ( AT4G13070.1 )
(BLAST)

001: MLALGYAKEI AQRFLRNPKW TSRFFLLHYQ SSNYSSYVKS RPFLQVQCKS ASFDVSQAQR WNLFAYDGLF SRRYLSNSTI ELRTDDNVVR FAFNNVSSSG
101: NNVVPTRKEK KWKRAKLSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KSPAEPYDPE SLTEEEQHYL KRTGEKRKNF
201: VLVGRRGVFG GVVLNLHLHW KKHETVKVIC KPCNKPGQVH EYAEELARLS KGIVIDVKPN NTIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH
301: TSEFIEKLEK ELEEYHKYVA RHKKKKDEEA EKKKEAVSKS KVV

Arabidopsis Description

At4g13070 [Source:UniProtKB/TrEMBL;Acc:Q67YJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.