CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34540	Canola	mitochondrion	96.62	96.91
AT4G13070.1	Thale cress	mitochondrion	81.85	77.55
VIT_10s0092g00060.t01	Wine grape	nucleus	59.08	71.38
PGSC0003DMT400032783	Potato	mitochondrion	55.69	65.34
KRH07419	Soybean	cytosol	46.46	57.85
KRH41679	Soybean	mitochondrion	62.46	54.72
Os06t0304500-01	Rice	mitochondrion	58.15	54.31
KRH60382	Soybean	mitochondrion	61.85	54.18
EES12394	Sorghum	mitochondrion	56.0	53.85
Zm00001d025706_P002	Maize	mitochondrion	56.0	53.85
TraesCS7B01G128100.1	Wheat	mitochondrion	55.69	53.71
TraesCS7D01G222900.1	Wheat	mitochondrion	55.08	53.27
TraesCS7A01G219200.1	Wheat	mitochondrion	55.08	53.27
GSMUA_Achr9P12700_001	Banana	mitochondrion	58.46	50.67
Solyc01g105090.2.1	Tomato	plastid	56.92	49.33
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	51.69	33.67
CDY31205	Canola	mitochondrion	38.15	33.33
CDX83289	Canola	mitochondrion	37.54	32.8
CDX92233	Canola	cytosol	8.92	29.29
CDY15751	Canola	mitochondrion, plastid, vacuole	25.54	23.92
CDY27892	Canola	plastid	32.0	23.85
CDY00840	Canola	plastid	31.69	23.3
CDY66660	Canola	plastid	31.08	22.35
CDY13722	Canola	mitochondrion, nucleus, plastid	30.77	20.0
CDX83707	Canola	mitochondrion, nucleus, plastid	30.77	19.84
CDY70711	Canola	nucleus	12.92	16.34
CDX95528	Canola	cytosol	22.15	15.22
CDY03983	Canola	cytosol	30.77	13.66
CDY30199	Canola	cytosol	24.31	12.32
CDY46704	Canola	plastid	24.62	10.22
CDY10350	Canola	plastid	25.85	9.69
CDY18518	Canola	plastid	24.0	9.68
CDY10696	Canola	plastid	25.23	9.58
CDY51940	Canola	plastid	24.31	9.42
CDX75965	Canola	plastid	24.31	9.4
CDY16286	Canola	plastid	24.31	9.18
CDY29740	Canola	plastid	24.0	8.88
CDY49049	Canola	plastid	24.92	8.3
CDY37526	Canola	plastid	24.92	8.26
CDX85512	Canola	golgi	22.77	6.75
CDY38130	Canola	golgi	22.15	6.53
CDX95529	Canola	plastid	2.77	2.97

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:A0A078II23	UniProt:A0A078II23	EnsemblPlants:CDY49592	ProteinID:CDY49592
ProteinID:CDY49592.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00093417001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426
PANTHER:PTHR31426:SF3	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EE0F8D	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

BnaC08g08920DBnaC08g08920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078II23]

Coordinates

chrLK032845:-:19845..21631

Molecular Weight (calculated)

38425.3 Da

IEP (calculated)

10.383

GRAVY (calculated)

-0.911

Length

325 amino acids

Sequence
(BLAST)

001: MMFTLGCAKG IANQLFRNPR WRSGLFVHHL QFPNYSVYTK QRPFVEVPHG SASSNQNVFE YCRRHMSNST VELRTEDNVV RFSFNNNVPD TKSVPMRTER
101: KWKRAKSSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KTPAEAYDPE TLTEEEQHYL KRTGEKRKNF VLVGRRGVFG
201: GVVLNMHLHW KKHETVKVIC KPCNKPGQIH EYAEELARLS KGIVIDVKPN NAIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH TSEFIEKLEK
301: ELEEYHKYVA RYKKKDEVDS KGKAV

Best Arabidopsis Sequence Match ( AT4G13070.1 )
(BLAST)

001: MLALGYAKEI AQRFLRNPKW TSRFFLLHYQ SSNYSSYVKS RPFLQVQCKS ASFDVSQAQR WNLFAYDGLF SRRYLSNSTI ELRTDDNVVR FAFNNVSSSG
101: NNVVPTRKEK KWKRAKLSRK AKVNELRFYR LKAKKKMNSP NPEVRIRYKL EKAKRKEEWL IEKLRKYDVP KSPAEPYDPE SLTEEEQHYL KRTGEKRKNF
201: VLVGRRGVFG GVVLNLHLHW KKHETVKVIC KPCNKPGQVH EYAEELARLS KGIVIDVKPN NTIVLYRGKN YVRPEVMSPV DTLSKDKALE KYRYEQSLEH
301: TSEFIEKLEK ELEEYHKYVA RHKKKKDEEA EKKKEAVSKS KVV

Arabidopsis Description

At4g13070 [Source:UniProtKB/TrEMBL;Acc:Q67YJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.