CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024130.1-P	Field mustard	cytosol	99.53	99.53
CDY46704	Canola	plastid	94.7	77.52
AT4G29750.1	Thale cress	plastid	84.71	64.57
GSMUA_Achr8P05570_001	Banana	cytosol	28.24	52.62
CDX92233	Canola	cytosol	7.33	47.47
KRH02705	Soybean	plastid	54.45	43.95
VIT_11s0016g02100.t01	Wine grape	plastid	59.59	43.21
CDX95528	Canola	cytosol	31.83	43.13
Solyc07g039500.2.1	Tomato	plastid	53.51	42.24
PGSC0003DMT400056675	Potato	cytosol, plastid	53.67	42.05
Os09t0363100-01	Rice	plastid	52.57	35.59
EER96635	Sorghum	plastid	53.35	35.55
CDY70711	Canola	nucleus	14.2	35.41
Zm00001d020230_P006	Maize	plastid	52.73	35.06
TraesCS5A01G194600.1	Wheat	plastid	51.95	34.22
TraesCS5B01G190100.1	Wheat	plastid	51.48	33.92
CDY10696	Canola	plastid	45.09	33.76
CDY16286	Canola	plastid	44.77	33.33
CDY10350	Canola	plastid	44.93	33.22
HORVU5Hr1G057460.1	Barley	nucleus, plastid	51.95	33.2
CDY29740	Canola	plastid	44.93	32.8
TraesCS5D01G197600.1	Wheat	plastid	44.31	31.42
CDY18518	Canola	plastid	38.69	30.77
CDY51940	Canola	plastid	39.94	30.51
CDX75965	Canola	plastid	39.94	30.48
CDY49049	Canola	plastid	39.31	25.82
CDY37526	Canola	plastid	38.69	25.28
CDY49592	Canola	mitochondrion	12.32	24.31
CDY34540	Canola	mitochondrion	12.01	23.77
CDY31205	Canola	mitochondrion	11.39	19.62
CDX83289	Canola	mitochondrion	11.23	19.35
CDX85512	Canola	golgi	32.92	19.25
CDY38130	Canola	golgi	31.67	18.4
CDY27892	Canola	plastid	11.54	16.97
CDY00840	Canola	plastid	11.54	16.74
CDY15751	Canola	mitochondrion, plastid, vacuole	9.05	16.71
CDY66660	Canola	plastid	11.39	16.15
CDY13722	Canola	mitochondrion, nucleus, plastid	11.39	14.6
CDX83707	Canola	mitochondrion, nucleus, plastid	11.39	14.48
CDX95529	Canola	plastid	5.93	12.54
CDY03983	Canola	cytosol	11.23	9.84

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:A0A078GYH1	UniProt:A0A078GYH1	EnsemblPlants:CDY30199	ProteinID:CDY30199
ProteinID:CDY30199.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00044795001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PD010559	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF7	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EF1937
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

BnaA03g49710DBnaA03g49710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYH1]

Coordinates

chrLK032250:-:213640..216902

Molecular Weight (calculated)

73088.4 Da

IEP (calculated)

6.807

GRAVY (calculated)

-0.604

Length

641 amino acids

Sequence
(BLAST)

001: MSAPWVNVKD ESFNQNRYRK DNALDLDDDD GGRGMVVESG RDKGVWRSKK SNTVEAERAV PEHELSRLRS VALRMVERVK VGSAGITQAL VEAIHEKWED
101: DEVVKLKFGE PCALNMKRTH ETLEKKTGGL VIWRSGSSVV LYRGISYNLK CVQSFIKQNN LDTSPEAKEY TAEEANYPKN VPKEQLSELC ELNDLLDEIG
201: PRFHDWTGCA PFPVDADLLP PMVLGYRCPF RVLPQGVKPC LSNKEMTEMR RLARTSPPHF ALGMSRELQG LAVAMIKLWE KSAIAKIAIK RGVENTRNER
301: MAEELKRLTR GVLVSRNKEY IVFYRGNDFM PPAVSEALRE RQKEITEVLQ NKEDQLRETA SARVTPVSQG KRIKTPLLAG TLAETIAASS RWAPEASSVD
401: VEELKRESAS IKRAALIRDL DLRLLYAKQK LRKAEKALAK VQKDLDPSDL PTDSEIITEE ERLLFRRIGL SMDPFLLVGR REVFDGTIEN MHLHWKHREL
501: VKIIVRGKSL PQVKHIAISL EAESGGVLVS VDNTLKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFTRSI ELQRREALKH HVADLEERIE LLKSGQEEDR
601: EPHKKSDGEE DDNLYLRVDE SDYSSDEDES FLSSEEEEEE T

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.