CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001704.1-P	Field mustard	plastid	98.45	98.33
CDX75965	Canola	plastid	97.38	97.26
CDX95528	Canola	cytosol	52.56	93.23
CDY18518	Canola	plastid	84.86	88.34
AT3G18390.1	Thale cress	plastid	85.58	84.67
CDX95529	Canola	plastid	26.1	72.28
CDX92233	Canola	cytosol	8.22	69.7
VIT_17s0000g03610.t01	Wine grape	plastid	60.91	61.57
KRH48490	Soybean	nucleus	56.73	60.18
TraesCS1A01G376400.1	Wheat	plastid	51.01	59.94
KRH39182	Soybean	plastid	56.5	59.92
GSMUA_Achr3P26360_001	Banana	plastid	54.59	59.64
Solyc03g119450.2.1	Tomato	nucleus	58.05	59.39
PGSC0003DMT400014644	Potato	plastid	57.69	58.74
Os05t0551900-00	Rice	plastid	54.59	58.57
KXG22496	Sorghum	plastid	54.71	57.3
KRH41639	Soybean	mitochondrion, plastid	49.46	57.08
HORVU1Hr1G083550.4	Barley	plasma membrane	52.68	57.03
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	52.68	56.74
Zm00001d038922_P001	Maize	extracellular	53.52	56.48
TraesCS1B01G396800.2	Wheat	plastid	52.68	55.81
CDY30199	Canola	cytosol	30.51	39.94
CDY46704	Canola	plastid	32.9	35.25
CDY10696	Canola	plastid	34.68	34.0
CDY10350	Canola	plastid	34.68	33.56
CDY16286	Canola	plastid	34.09	33.22
CDY29740	Canola	plastid	34.21	32.69
CDY70711	Canola	nucleus	9.89	32.3
CDY49049	Canola	plastid	32.3	27.77
CDY37526	Canola	plastid	32.06	27.42
CDY34540	Canola	mitochondrion	9.54	24.69
CDY49592	Canola	mitochondrion	9.42	24.31
CDX85512	Canola	golgi	30.04	22.99
CDY31205	Canola	mitochondrion	9.89	22.31
CDY38130	Canola	golgi	29.32	22.3
CDX83289	Canola	mitochondrion	9.77	22.04
CDY27892	Canola	plastid	10.73	20.64
CDY00840	Canola	plastid	10.85	20.59
CDY66660	Canola	plastid	10.01	18.58
CDY15751	Canola	mitochondrion, plastid, vacuole	7.15	17.29
CDY13722	Canola	mitochondrion, nucleus, plastid	10.13	17.0
CDX83707	Canola	mitochondrion, nucleus, plastid	10.13	16.87
CDY03983	Canola	cytosol	10.01	11.48

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:A0A078ILH3	UniProt:A0A078ILH3	EnsemblPlants:CDY51940	ProteinID:CDY51940
ProteinID:CDY51940.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00004529001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EDC194	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

BnaAnng11170DBnaAnng11170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILH3]

Coordinates

chrLK033040:+:80134..84020

Molecular Weight (calculated)

95354.8 Da

IEP (calculated)

5.526

GRAVY (calculated)

-0.758

Length

839 amino acids

Sequence
(BLAST)

001: MAALLPTNIT EMPLRSPFLL TSTSRYSSSP SLHALIFHSL SPKPYRHIVQ PLSSLRTSER NNRSHNNRRS DHRSPKPTPP WIDKWPPSSS DEKANERGNL
101: QSSEEESEAK RRYLEKDKGQ SSIERIVLRL RNLGLAASDD EEDDDNDGGD GEEDVKKPVT GEERLGDLLK REWVRPDVIL AEGEESGDEE DDDVLLPWEK
201: NEEEQVAERI EGDGGLAVKK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIHDT WRKEELVRLK FHEVLARDMK TAHEIVERRT
301: GGMVIWRAGS VMVVYRGRDY QGPSAVSNQT ARPEETLFVP DVSSAGDEAT NAKDNNQNAP PEIKDPIVKN PIRKESMTEE EAEFNQLLDS LGPRFQEYWG
401: TGVLPVDADL LPPTIPGYKT PFRLLPTGMR SNLTNAEMTN LRKIGKTLPC HFALGRNRNH QGLAAAILKL WEKSLIAKIA VKRGIQNTNN KLMAEEIKTL
501: TGGVLLLRNK YYIVIYRGKD FLPSSVAATL AERQELTKEI QDVEEKVRNR DIEATQPVGD KVPAEAGTLA EFYEAQARWG KEITPDHREK MIEEASRVAS
601: ARVVKRIQHK LNLAQSKFQR AEKLLSKVEA SMIPSGPDYD QEVISEEERI MFRKVGLKMK SYLPLGIRGV FDGVIENMHL HWKHRELVKL ISKQKSLAFV
701: EDTARLLEYE SGGVLVAIEK VPKGFALIYY RGKNYQRPIS LRPRNLLTKA KALKRSIAMQ RHEALSQHIS ELEKTIEQMQ NELTAKNPSY NESEWENDDD
801: DEDGGEEEKD DAEDDESDWD EADTESTISS LEEADYPLR

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.