CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95528	Canola	cytosol	57.07	97.25
Bra037586.1-P	Field mustard	plastid	97.64	96.33
CDY51940	Canola	plastid	88.34	84.86
CDX75965	Canola	plastid	88.21	84.64
CDX95529	Canola	plastid	31.39	83.5
AT3G18390.1	Thale cress	plastid	85.73	81.49
CDX92233	Canola	cytosol	8.56	69.7
VIT_17s0000g03610.t01	Wine grape	plastid	62.41	60.6
KRH39182	Soybean	plastid	58.06	59.17
KRH48490	Soybean	nucleus	57.94	59.04
TraesCS1A01G376400.1	Wheat	plastid	51.86	58.54
Solyc03g119450.2.1	Tomato	nucleus	58.68	57.68
GSMUA_Achr3P26360_001	Banana	plastid	54.84	57.55
PGSC0003DMT400014644	Potato	plastid	58.31	57.04
Os05t0551900-00	Rice	plastid	55.34	57.03
KRH41639	Soybean	mitochondrion, plastid	50.62	56.12
HORVU1Hr1G083550.4	Barley	plasma membrane	53.72	55.87
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	53.72	55.58
KXG22496	Sorghum	plastid	54.59	54.93
Zm00001d038922_P001	Maize	extracellular	54.09	54.84
TraesCS1B01G396800.2	Wheat	plastid	53.85	54.8
CDY30199	Canola	cytosol	30.77	38.69
CDY10696	Canola	plastid	35.98	33.88
CDY46704	Canola	plastid	32.75	33.72
CDY10350	Canola	plastid	35.86	33.33
CDY16286	Canola	plastid	34.49	32.29
CDY29740	Canola	plastid	34.86	32.0
CDY70711	Canola	nucleus	10.05	31.52
CDY49049	Canola	plastid	33.25	27.46
CDY37526	Canola	plastid	33.13	27.22
CDY34540	Canola	mitochondrion	9.68	24.07
CDY49592	Canola	mitochondrion	9.68	24.0
CDX85512	Canola	golgi	31.27	22.99
CDY38130	Canola	golgi	30.65	22.39
CDY31205	Canola	mitochondrion	10.05	21.77
CDX83289	Canola	mitochondrion	9.93	21.51
CDY27892	Canola	plastid	10.67	19.72
CDY00840	Canola	plastid	10.55	19.23
CDY66660	Canola	plastid	9.68	17.26
CDY15751	Canola	mitochondrion, plastid, vacuole	6.95	16.14
CDY13722	Canola	mitochondrion, nucleus, plastid	9.68	15.6
CDX83707	Canola	mitochondrion, nucleus, plastid	9.68	15.48
CDY03983	Canola	cytosol	9.68	10.66

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:A0A078G1Q8	UniProt:A0A078G1Q8	EnsemblPlants:CDY18518	ProteinID:CDY18518
ProteinID:CDY18518.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00005538001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PD010559	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EEEC7A
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

BnaA01g26770DBnaA01g26770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1Q8]

Coordinates

chrLK032086:+:227490..231523

Molecular Weight (calculated)

91245.2 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.712

Length

806 amino acids

Sequence
(BLAST)

001: MPLRSSLPLT STSRYSSSPS LHALLFDSLS AAKPSRRVLR PFSSLRTSER SSNNGSRNNR RLDHRNSKPN PPWIDKWPPS SSAAKKSNER NGGGQSAIER
101: IVLRLRNLGL ASDEEEDAED NDGDGGDVKT VTGEERLGDL LKREWVRPDV ILAEGEEESE VEDDDVSLPW EKKNEEEHAA ERIEGDGGVA LKKRRGSRAP
201: SLAELTVEDS ELRRLRGEGM YLRVKINIPK AGLTQAVMEK INDTWRKEEL VRLKFHEVLA RDMKTAHEIV ERRTGGMVIW RAGSVMVVYR GLDYQGPHVI
301: SNQMARPEET LFVPDVSSAD DEARHAKDNQ NAPPEIKDPI VKNPIRKESM TEEEAEFNSL LDSLGPRFHE WWGTGVLPVN ADLLPPTIPG YKTPFRLLPT
401: GMRSNLTNAE MTNLRKIGKT LPCHFSLGRN RNHQGLAAAI LKLWEKSLIA KIAVKRGIQN TNNKLMSDEI KTLTGGVLLL RNKYYIVLYR GKDFLPSSVA
501: ATLAERRELT KDIQDVEEKV RIRDIEATQP VGEKVPAEAG TLAEFYEAQA RWGKEITPDH REKMIEEASR IASARVVKRI QHKLDLSQSK FDRAEKLLSK
601: IEASMIPNGP DYDQEVISEE ERIMFRKVGL KMKSYLPLGI RGVFDGVIEN MHLHWKHREL VKLISKQKSL AFVEDTARLL EYESGGVLVA IEKVPKGFAL
701: IYYRGKNYQR PVSLRPRNLL TKAKALKRSI AMQRHEGLSQ HISELEKTIE QMQNELTAKN PSYNESEWEN DDDDDGEEEK DDESDWDEAD GESTISSLEE
801: ADSPLR

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.