CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024130.1-P	Field mustard	cytosol	77.65	94.85
CDY30199	Canola	cytosol	77.52	94.7
AT4G29750.1	Thale cress	plastid	80.97	75.39
GSMUA_Achr8P05570_001	Banana	cytosol	22.99	52.33
KRH02705	Soybean	plastid	48.91	48.24
CDX92233	Canola	cytosol	6.0	47.47
VIT_11s0016g02100.t01	Wine grape	plastid	52.87	46.83
Solyc07g039500.2.1	Tomato	plastid	47.38	45.69
PGSC0003DMT400056675	Potato	cytosol, plastid	47.64	45.6
CDX95528	Canola	cytosol	26.05	43.13
EER96635	Sorghum	plastid	47.25	38.46
Os09t0363100-01	Rice	plastid	46.49	38.44
Zm00001d020230_P006	Maize	plastid	46.49	37.76
TraesCS5A01G194600.1	Wheat	plastid	46.49	37.41
TraesCS5B01G190100.1	Wheat	plastid	45.98	37.0
HORVU5Hr1G057460.1	Barley	nucleus, plastid	45.98	35.89
CDY70711	Canola	nucleus	11.62	35.41
CDY10696	Canola	plastid	38.7	35.4
CDY16286	Canola	plastid	38.57	35.08
CDY29740	Canola	plastid	39.08	34.85
TraesCS5D01G197600.1	Wheat	plastid	40.23	34.85
CDY10350	Canola	plastid	38.44	34.72
CDX75965	Canola	plastid	35.38	32.98
CDY51940	Canola	plastid	35.25	32.9
CDY18518	Canola	plastid	33.72	32.75
CDY49049	Canola	plastid	33.33	26.74
CDY37526	Canola	plastid	32.69	26.1
CDY49592	Canola	mitochondrion	10.22	24.62
CDY34540	Canola	mitochondrion	9.96	24.07
CDX85512	Canola	golgi	28.35	20.26
CDY31205	Canola	mitochondrion	9.45	19.89
CDX83289	Canola	mitochondrion	9.32	19.62
CDY38130	Canola	golgi	27.59	19.58
CDX95529	Canola	plastid	7.41	19.14
CDY27892	Canola	plastid	9.58	17.2
CDY15751	Canola	mitochondrion, plastid, vacuole	7.54	17.0
CDY00840	Canola	plastid	9.58	16.97
CDY66660	Canola	plastid	9.32	16.15
CDY13722	Canola	mitochondrion, nucleus, plastid	9.2	14.4
CDX83707	Canola	mitochondrion, nucleus, plastid	9.2	14.29
CDY03983	Canola	cytosol	9.2	9.84

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:A0A078IBI3	UniProt:A0A078IBI3	EnsemblPlants:CDY46704	ProteinID:CDY46704
ProteinID:CDY46704.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00086013001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PD010559	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF7	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EE75A4
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

BnaC07g42090DBnaC07g42090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBI3]

Coordinates

chrLK032682:+:52101..55058

Molecular Weight (calculated)

89584.9 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.651

Length

783 amino acids

Sequence
(BLAST)

001: MALCHFPVNL HTVPSSSSSS SFHPLVYSNL WIRKLRFHPF SHAVQLSAIR AAAIDIDTHP KKKKKKRKPK PGFFEEISDK WSSRISPKDS NFPWQKKHEE
101: QTQPHHQEES ESESEVNQSS RLTSKITDSN LRSSFPRPNG YMSAPWVNDN VSKPVKDESF NENRYRKENA LDLDDDGRGM VVESGRDKGV WRSRKSNTVE
201: AEKIVPEHEL SRLRSVALRM VERVKVGSAG ITQALVEAII DKWEDDEVVK LKFGEPCALN MKRTHEILEK KTGGLVIWRS GSSVVLYRGI SYNLKCVQSF
301: IKQNDEVARE YTAEEANYPK NVPKEQLSEL CELNDLLDEI GPRFHDWTGC APLPVDADLL PPMVLGYRCP FRVLPQGVKP CLSNKEMTEM RRLARTSPPH
401: FALGRSRELQ GLAVAMVKLW EKSAIAKIAI KRGVENTRNE RMAEELKRLT RGVLVSRNKE YIVFYRGNDF MPPAVSEALR ERQKEITEVL QNKEDQFRET
501: ASARVALTSQ SKPTRKKTPL LAGTLAETIA ASSRWAPDAS SVDVEELKRE SASIKRAALI RDLDLRLLYA KQKLKKAEKA LAKVQKDLDP SDLPTDSEII
601: TEEERLLFRR IGLSMDPFLL VGRREVFDGT IENMHLHWKH RELVKIIVRG KSLPQVKHIA ISLEAESGGV LVSVDNTLKG YAIILYRGKN YQMPFRLRPS
701: NLLTRKKAFA RSIELQRREA LKYHVADLEE RIELLKTGQE EDREPHKKSD GEEDNLYLRV DESDYSSDED ESFLSLEEEE EET

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.