Factsheet for Bra024130.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30199	Canola	cytosol	99.53	99.53
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	12.32	79.8
CDY46704	Canola	plastid	94.85	77.65
AT4G29750.1	Thale cress	plastid	85.02	64.8
GSMUA_Achr8P05570_001	Banana	cytosol	28.39	52.91
KRH02705	Soybean	plastid	54.76	44.21
VIT_11s0016g02100.t01	Wine grape	plastid	59.91	43.44
Solyc07g039500.2.1	Tomato	plastid	53.82	42.49
PGSC0003DMT400056675	Potato	cytosol, plastid	53.98	42.3
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	9.2	38.82
EER96635	Sorghum	plastid	53.82	35.86
Os09t0363100-01	Rice	plastid	52.89	35.8
Zm00001d020230_P006	Maize	plastid	53.04	35.27
TraesCS5A01G194600.1	Wheat	plastid	52.26	34.43
TraesCS5B01G190100.1	Wheat	plastid	51.79	34.12
Bra033883.1-P	Field mustard	mitochondrion	46.02	34.06
HORVU5Hr1G057460.1	Barley	nucleus, plastid	52.26	33.4
Bra036865.1-P	Field mustard	plastid	44.31	33.02
Bra011945.1-P	Field mustard	mitochondrion	9.67	32.12
TraesCS5D01G197600.1	Wheat	plastid	44.62	31.64
Bra001704.1-P	Field mustard	plastid	39.94	30.48
Bra037586.1-P	Field mustard	plastid	38.69	30.36
Bra039123.1-P	Field mustard	plastid	39.16	25.33
Bra034894.1-P	Field mustard	mitochondrion	12.17	24.15
Bra000492.1-P	Field mustard	mitochondrion	11.23	20.34
Bra023555.1-P	Field mustard	golgi	32.61	19.0
Bra036994.1-P	Field mustard	nucleus	21.84	18.89
Bra015127.1-P	Field mustard	plastid	11.86	17.47
Bra033017.1-P	Field mustard	plastid	11.7	15.56
Bra025285.1-P	Field mustard	plastid	11.7	14.12

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EnsemblPlantsGene:Bra024130	EnsemblPlants:Bra024130.1	EnsemblPlants:Bra024130.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920
UniProt:M4E5S6	PFAM:PD010559	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF7
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0002540D37	InterPro:YhbY_like_sf	SEG:seg

Description

AT4G29750 (E=6e-126) | RNA binding

Coordinates

chrA03:+:27420444..27423580

Molecular Weight (calculated)

72984.2 Da

IEP (calculated)

6.807

GRAVY (calculated)

-0.604

Length

641 amino acids

Sequence
(BLAST)

001: MSAPWVNVKD ESFNQNRYRK DNALDLDDDD GGRGMVVESG RDKGVWRSKK SNTVEAERAV PEHELSRLRS VALRMVERVK VGSAGITQAL VEAIHEKWED
101: DEVVKLKFGE PCALNMKRTH ETLEKKTGGL VIWRSGSSVV LYRGISYNLK CVQSFIKQNN LDTSPEAKEY TAEEANYPKN VPKEQLSELC ELNDLLDEIG
201: PRFHDWTGCA PFPVDADLLP PMVLGYRCPF RVLPQGVKPC LSNKEMTEMR RLARTSPPHF ALGRSRELQG LAVAMIKLWE KSAIAKIAIK RGVENTRNER
301: MAEELKRLTR GVLVSRNKEY IVFYRGNDFM PPAVSEALRE RQKEITEVLQ NKEDQLRETA SARVTPVSQG KGIKTPLLAG TLAETIAASS RWAPEASSVD
401: VEELKRESAS IKRAALIRDL DLRLLYAKQK LRKAEKALAK VQKDLDPSDL PTDSEIITEE ERLLFRRIGL SMDPFLLVGR REVFDGTIEN MHLHWKHREL
501: VKIIVRGKSL PQVKHIAISL EAESGGVLVS VDNTLKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKH HVADLEERIE LLKSGQEEDR
601: EPHKKSDGEE DDNLYLRVDE SDYSSDEDES FLSSEEEEEE T

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.