Factsheet for Bra037586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18518	Canola	plastid	96.33	97.64
Bra001704.1-P	Field mustard	plastid	86.78	84.4
AT3G18390.1	Thale cress	plastid	84.46	81.37
VIT_17s0000g03610.t01	Wine grape	plastid	61.57	60.6
KRH39182	Soybean	plastid	57.16	59.04
KRH48490	Soybean	nucleus	56.92	58.79
TraesCS1A01G376400.1	Wheat	plastid	50.8	58.12
GSMUA_Achr3P26360_001	Banana	plastid	54.22	57.68
Solyc03g119450.2.1	Tomato	nucleus	57.65	57.44
PGSC0003DMT400014644	Potato	plastid	57.28	56.8
Os05t0551900-00	Rice	plastid	54.1	56.52
KRH41639	Soybean	mitochondrion, plastid	50.18	56.4
HORVU1Hr1G083550.4	Barley	plasma membrane	52.63	55.48
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	52.63	55.2
KXG22496	Sorghum	plastid	53.49	54.56
Zm00001d038922_P001	Maize	extracellular	53.0	54.47
TraesCS1B01G396800.2	Wheat	plastid	52.75	54.42
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	10.04	53.95
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	5.51	45.45
Bra024130.1-P	Field mustard	cytosol	30.36	38.69
Bra033883.1-P	Field mustard	mitochondrion	35.01	33.03
Bra036865.1-P	Field mustard	plastid	33.78	32.09
Bra011945.1-P	Field mustard	mitochondrion	7.47	31.61
Bra039123.1-P	Field mustard	plastid	32.44	26.74
Bra034894.1-P	Field mustard	mitochondrion	9.42	23.84
Bra023555.1-P	Field mustard	golgi	30.48	22.64
Bra000492.1-P	Field mustard	mitochondrion	9.67	22.32
Bra015127.1-P	Field mustard	plastid	10.77	20.23
Bra036994.1-P	Field mustard	nucleus	14.93	16.46
Bra033017.1-P	Field mustard	plastid	9.42	15.98
Bra025285.1-P	Field mustard	plastid	9.55	14.69

Protein Annotations

EnsemblPlants:Bra037586.1	EnsemblPlants:Bra037586.1-P	EnsemblPlantsGene:Bra037586	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
ncoils:Coil	PANTHER:PTHR31846	PANTHER:PTHR31846:SF4	PFAM:PF01985	PFscan:PS51295	SEG:seg
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000254504B	UniProt:M4F923	MapMan:35.1	:

Description

AT3G18390 (E=0.0) EMB1865 | EMB1865 (embryo defective 1865); RNA binding

Coordinates

chrA01:-:22135859..22139560

Molecular Weight (calculated)

92396.6 Da

IEP (calculated)

6.314

GRAVY (calculated)

-0.709

Length

817 amino acids

Sequence
(BLAST)

001: MPLRSSLPLT STSRYSSSPS LHALLFDSLS AAKPSRRVLR PFSSLRTSER SSNNGSRNNR RLDHRDSKPN PPWIDKWPPS SSAAKKSNEH NGGGEIPSPY
101: VEKDRGQSAI ERIVLRLRNL GLASDEEEDA EDNDGDGGDA KTVTGEERLG DLLKREWVRP DVILAEGEEE SEVEDDDVSL PWEKKNEEEH AAERIEGDGG
201: VALKKRRGRA PSLAELTVED SELRRLRGEG MYLRVKINIP KAGLTQAVME KINGTWRKEE LVRLKFHEVL ARDMKTAHEI VERRTGGMVI WRAGSVMVVY
301: RGLDYQGPSV ISNQMARPEE TLFVPDVSSA GDEARHAKDY QNAPPEIKDP IVKNPIRKES MTEEEAEFNS LLDSLGPRFH EWWGTGVLPV NADLLPPTIP
401: GYKTPFRLLP TGMRSNLTNA EMTNLRKIGK TLPCHFSLGR NRNHQGLAGA ILKLWEKSLI AKIAVKRGIQ NTNNKLMSDE IKTLTGGVLL LRNKYYIVIY
501: RGKDFLPSSV AATLAERQEL TKEIQDVEEK VRIRDIEATQ PVRDKVPAEA GTLAEFYEAQ ARWGKKITLD HQEKMIEEAS RIASARVVKR IQHKLDLSQS
601: KFDRAEKLLS KIEASMIPNG PDYDQEVISE EERIMFRKVG LKMKSYLPLG IRGVFDGVIE NMHLHWKHRE LVQLISKQKS LAFVEDTARL LEYESGGVLV
701: AIEKVPKGFA LIYYRGKNYQ RPVSLRPRNL LTKAKALKRS IAMQRHEGLS QHISELEKTI EQMQNELTGK NPSYNESEWE NDDDDDGEEE KDDESDWDEA
801: DGESTISSLE EADSPLR

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.