Factsheet for Bra011945.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000492.1-P	Field mustard	mitochondrion	81.35	44.35
AT2G28480.1	Thale cress	mitochondrion	83.42	43.28
KRH29618	Soybean	nucleus	60.62	41.2
Solyc09g005270.2.1	Tomato	mitochondrion	69.95	36.89
PGSC0003DMT400030768	Potato	mitochondrion	68.91	36.14
TraesCS3D01G505800.1	Wheat	mitochondrion	69.43	34.1
TraesCS3B01G562100.1	Wheat	mitochondrion	69.95	34.09
HORVU3Hr1G110360.1	Barley	mitochondrion	68.91	33.25
EES02081	Sorghum	mitochondrion	68.91	32.84
Zm00001d042043_P001	Maize	mitochondrion	66.84	32.74
VIT_05s0102g00700.t01	Wine grape	plastid	69.95	32.45
PGSC0003DMT400039655	Potato	mitochondrion, plastid	65.8	32.07
CDY15751	Canola	mitochondrion, plastid, vacuole	55.96	31.12
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	66.32	30.99
KRH24621	Soybean	mitochondrion	67.88	30.68
Bra034894.1-P	Field mustard	mitochondrion	51.3	30.65
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	68.91	30.65
Os01t0958400-02	Rice	mitochondrion	65.28	30.22
GSMUA_Achr3P16860_001	Banana	mitochondrion	68.39	29.53
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	18.65	23.68
Bra015127.1-P	Field mustard	plastid	37.31	16.55
Bra033017.1-P	Field mustard	plastid	38.34	15.35
Bra025285.1-P	Field mustard	plastid	38.34	13.94
Bra024130.1-P	Field mustard	cytosol	32.12	9.67
Bra001704.1-P	Field mustard	plastid	32.64	7.5
Bra037586.1-P	Field mustard	plastid	31.61	7.47
Bra033883.1-P	Field mustard	mitochondrion	29.53	6.58
Bra036865.1-P	Field mustard	plastid	26.94	6.05
Bra039123.1-P	Field mustard	plastid	29.53	5.75
Bra036994.1-P	Field mustard	nucleus	20.73	5.4
Bra023555.1-P	Field mustard	golgi	27.98	4.91
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	1.04	2.02

Protein Annotations

EnsemblPlants:Bra011945.1	EnsemblPlants:Bra011945.1-P	EnsemblPlantsGene:Bra011945	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	PFAM:PF01985	PFscan:PS51295	SMART:SM01103	SUPFAM:SSF75471
UniParc:UPI00025412D8	UniProt:M4D637	MapMan:35.1	:	:	:

Description

AT2G28480 (E=3e-085) | RNA binding

Coordinates

chrA07:-:11059515..11060172

Molecular Weight (calculated)

22370.1 Da

IEP (calculated)

10.146

GRAVY (calculated)

-0.562

Length

193 amino acids

Sequence
(BLAST)

001: MQVRYSIFKY KKLNLTASPY RLLFNAGQRH RYLIEKLKRY DVAKAEGPEV RPHEITGEER FYLKKMGQKR SNYVPIGRRG VFGGVILNMH LHWKKHETVK
101: VICNNSKAGQ VQQYAEELAE LSGGVPVNIV GDDTSIFYRG KGYVQPNVMS PIDTLSKKRA YEKSKYEQSL ESVKHFIAVA EKEIELYYRH VAL

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.