Factsheet for Bra025285.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13722	Canola	mitochondrion, nucleus, plastid	91.9	97.6
CDX83707	Canola	mitochondrion, nucleus, plastid	90.4	95.24
Bra033017.1-P	Field mustard	plastid	78.53	86.51
AT3G27550.2	Thale cress	mitochondrion	88.32	85.74
PGSC0003DMT400015748	Potato	nucleus, plastid	57.25	57.04
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	58.95	54.62
Os05t0145300-01	Rice	mitochondrion	56.87	53.93
GSMUA_Achr9P19780_001	Banana	nucleus	55.74	52.3
KRH56532	Soybean	mitochondrion	63.65	51.76
KRG93197	Soybean	mitochondrion	63.65	51.76
HORVU1Hr1G019580.2	Barley	plastid	55.18	51.22
TraesCS1A01G108800.1	Wheat	mitochondrion	56.5	49.18
TraesCS1B01G108100.1	Wheat	mitochondrion	56.31	49.02
TraesCS1D01G090300.1	Wheat	mitochondrion	56.12	48.93
Zm00001d010884_P001	Maize	mitochondrion	55.56	45.74
Zm00001d024823_P001	Maize	mitochondrion	55.74	45.26
EES17695	Sorghum	plastid	57.44	44.53
Bra011945.1-P	Field mustard	mitochondrion	13.94	38.34
Bra034894.1-P	Field mustard	mitochondrion	19.02	31.27
VIT_14s0066g00360.t01	Wine grape	nucleus	61.77	30.74
Bra000492.1-P	Field mustard	mitochondrion	19.21	28.81
Bra015127.1-P	Field mustard	plastid	21.09	25.75
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	6.78	23.68
Bra024130.1-P	Field mustard	cytosol	14.12	11.7
Bra033883.1-P	Field mustard	mitochondrion	16.57	10.16
Bra001704.1-P	Field mustard	plastid	15.82	10.0
Bra037586.1-P	Field mustard	plastid	14.69	9.55
Bra039123.1-P	Field mustard	plastid	16.38	8.78
Bra036865.1-P	Field mustard	plastid	14.12	8.72
Bra036994.1-P	Field mustard	nucleus	11.11	7.96
Bra023555.1-P	Field mustard	golgi	12.43	6.0
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	0.56	3.03

Protein Annotations

EnsemblPlants:Bra025285.1	EnsemblPlants:Bra025285.1-P	EnsemblPlantsGene:Bra025285	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI000253F599	UniProt:M4E929	MapMan:35.1	:	:

Description

AT3G27550 (E=1e-196) | group II intron splicing factor CRS1-related

Coordinates

chrA06:+:22391099..22393744

Molecular Weight (calculated)

61236.4 Da

IEP (calculated)

8.018

GRAVY (calculated)

-1.088

Length

531 amino acids

Sequence
(BLAST)

001: MLTTRSLSRH CSRTCKWSLS SLLQSDSSRN LVLSSSPVTS NVMLQPGNSS SLMHQVLKGW SRAMSTSRGR SMRSKVESRM RKESGKTLRE IRRAKKLKKK
101: LMTDEERLIY NLKRAKKKVA LLLQKLKKYD LPELPSPVHD PELFTPEQIQ AFKKIGFKNK NYVPVGVRGV FGGVVQNMHM HWKFHETVQV CCDNFPKEKI
201: KEMATMIARL SGGVVINIHN VKTIIMFRGR NYRQPKNLIP VNTLTKRKAL FKARFEQALE SQKLNIKKTE QQLRRMGVNP EDPVAMASIH RVASTFFNAI
301: DKKEGSPYVF HGDKQSERGT SVVNTEETEP ADEDSDQEEL DRFIAEIEEA ADKEWEEEEA AEQEESGRIR YWNREEFAGR SRGPEMRSYG DSSHGFRRNE
401: RDTRNQRRSN DSDDDDDDND SDQLDSEDDD EIPKRFDRPR SNTRRQGQDF VRRSHDPRPR VRSDEDVLSD LDNTMWDSGD EEDAAPANYI SSSDEDEGEN
501: RTISAAKQPR FSDNNSKSKS GTQRDEDWDS D

Best Arabidopsis Sequence Match ( AT3G27550.2 )
(BLAST)

001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.