Factsheet for Bra039123.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002289.1-P
Bra010714.1-P
Bra018081.1-P
Bra020096.1-P
Bra033597.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01370.1	Bra018081.1-P	AT3G48150.1	21798944
AT3G01370.1	Bra033769.1-P	AT3G48150.1	21798944
AT3G01370.1	Bra010714.1-P	AT4G39050.1	21798944
AT3G01370.1	Bra033597.1-P	AT4G39050.1	21798944
AT3G01370.1	Bra002289.1-P	AT5G20280.1	21798944
AT3G01370.1	Bra020096.1-P	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37526	Canola	plastid	96.57	97.55
AT3G01370.1	Thale cress	plastid	84.46	82.79
PGSC0003DMT400069622	Potato	cytosol	16.75	66.14
Solyc08g044250.1.1	Tomato	mitochondrion	3.53	63.64
VIT_14s0066g01910.t01	Wine grape	cytosol	56.81	53.93
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	5.15	51.52
PGSC0003DMT400003527	Potato	plastid	54.29	51.29
GSMUA_Achr10P...	Banana	plastid	49.24	48.85
KRG93409	Soybean	plastid	50.05	48.3
KRG93411	Soybean	plastid	46.92	44.97
OQU81723	Sorghum	plastid	46.92	44.5
Zm00001d025633_P007	Maize	plastid	46.32	44.18
Zm00001d025629_P007	Maize	plastid	46.32	44.18
Os04t0464800-00	Rice	plastid	37.54	43.41
Solyc02g087250.2.1	Tomato	extracellular	54.69	42.98
TraesCS2B01G346500.1	Wheat	plastid	46.52	42.49
HORVU2Hr1G081140.2	Barley	plastid	46.42	42.28
TraesCS2D01G327400.1	Wheat	plastid	46.12	42.12
TraesCS2A01G335400.1	Wheat	plastid	46.01	40.79
Bra024130.1-P	Field mustard	cytosol	25.33	39.16
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	5.45	35.53
Bra033883.1-P	Field mustard	mitochondrion	28.86	33.03
Bra037586.1-P	Field mustard	plastid	26.74	32.44
Bra001704.1-P	Field mustard	plastid	27.25	32.14
Bra036865.1-P	Field mustard	plastid	27.65	31.86
Bra011945.1-P	Field mustard	mitochondrion	5.75	29.53
Bra034894.1-P	Field mustard	mitochondrion	8.07	24.77
Bra000492.1-P	Field mustard	mitochondrion	8.17	22.88
Bra023555.1-P	Field mustard	golgi	22.6	20.36
Bra015127.1-P	Field mustard	plastid	8.88	20.23
Bra036994.1-P	Field mustard	nucleus	13.62	18.22
Bra033017.1-P	Field mustard	plastid	7.97	16.39
Bra025285.1-P	Field mustard	plastid	8.78	16.38

Protein Annotations

MapMan:16.12.2.1.2	Gene3D:3.30.110.60	EnsemblPlantsGene:Bra039123	EnsemblPlants:Bra039123.1	EnsemblPlants:Bra039123.1-P	ncoils:Coil
GO:GO:0000372	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009532	GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920
UniProt:M4FDF2	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF16	InterPro:RNA-binding_CRM
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000254776F	InterPro:YhbY_like_sf	SEG:seg	:

Description

AT3G01370 (E=6e-240) ATCFM2, CFM2 | ATCFM2 (CRM FAMILY MEMBER 2); RNA binding

Coordinates

chrA05:+:23852282..23856577

Molecular Weight (calculated)

110874.0 Da

IEP (calculated)

8.430

GRAVY (calculated)

-0.556

Length

991 amino acids

Sequence
(BLAST)

001: MLLPVCHQQP LLPPDRIFPP FLIPRTLISL RRASFVVCSS SSDRKTLPQS AIQRIADKLR TLGFAEETNH DSPTTSGQNS PGEIFVLLPD QLPIHRVGHT
101: IDTSWSTPSY PVPKPGSGTA ISRFHELKRV WKKEKQVESK NEEKVPSLAE LTLPAGELRR LRSEGIRLTK KIKIGKAGVT EGIVNGIHER WRTTEVVKIY
201: CEDISGMNMK RTHDVLETKT GGLVIWRSGS KILLYRGVNY HYPYFVADGN LPQASSLETS SEASSVGDSR EKQTTAESSD TSVTNKMVNK PLLIQGVGSP
301: DKVRFQLPGE VQLVEEADRL LEGLGPRFTD WWAYDPLPVD GDLLPAVVPE YRRPFRLLPY GVSPKLTDDE MTILRRLGRP LPCHFALGRN RNLQGLAVAI
401: VKLWEKCEVA KIAVKRGAQN TNSELMAEEL KWLTGGTLIS RDKDFIVLYR GKDFLPSAVS SAIEERRRQT MIMDKLSVHG NNLTENEEEI KLQAVTKDHQ
501: MKPRQRKSPE AILERTSIKL SMALEKKANA EKILAELESR ESPQQSDIDK EGITEDEKYM LRKIGLKMKP FLLLGRRGVF DGTIENMHLH WKYRELVKII
601: CHEHSIEAAY EVAEILEAES GGILVAVEMV SKGYAIIVYR GKNYERPSCL RPQTLLSKRE ALKRSVEAQR RRSLKLHVLK LSNNIDELNR QLVEDSTTNE
701: TCSDGEPSSR VVQEETENQN VEPDKSRGET ELSYSSDSTV PSSGEENWGD DSEDEVNQST TSSHAYQEDE SGSGSSRRHE GNSLDSTANI SVLTETGFAE
801: ASSFHDRSMP RNSFLNAERK VPTGQELGSS TRSGSALTES KRENHELVAD LSNRERLILR KQALKMKKRP PFAVGRSNVV TGLAKTLKTH FQRNPLAIVN
901: VKGRAKGTSV QEVIAKLKEE TGALLVSQEP SKVILYRGWG AEEEMKSFYP NSNVKNSINL TTTSSQRSLV NDPPPVSPAL IEAIRLECGL E

Best Arabidopsis Sequence Match ( AT3G01370.1 )
(BLAST)

0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L

Arabidopsis Description

CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.