Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr4P06050_001 | |
| GSMUA_Achr9P22510_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g044250.1.1 | Tomato | mitochondrion | 3.6 | 65.45 |
| PGSC0003DMT400069622 | Potato | cytosol | 14.41 | 57.37 |
| VIT_14s0066g01910.t01 | Wine grape | cytosol | 54.05 | 51.72 |
| CDY49049 | Canola | plastid | 48.65 | 49.8 |
| Bra039123.1-P | Field mustard | plastid | 48.85 | 49.24 |
| CDY37526 | Canola | plastid | 48.35 | 49.24 |
| AT3G01370.1 | Thale cress | plastid | 49.15 | 48.57 |
| OQU81723 | Sorghum | plastid | 50.05 | 47.85 |
| Zm00001d025633_P007 | Maize | plastid | 49.15 | 47.26 |
| Zm00001d025629_P007 | Maize | plastid | 49.15 | 47.26 |
| Os04t0464800-00 | Rice | plastid | 40.14 | 46.79 |
| PGSC0003DMT400003527 | Potato | plastid | 48.95 | 46.62 |
| TraesCS2B01G346500.1 | Wheat | plastid | 50.05 | 46.08 |
| TraesCS2D01G327400.1 | Wheat | plastid | 49.95 | 45.99 |
| HORVU2Hr1G081140.2 | Barley | plastid | 49.75 | 45.68 |
| TraesCS2A01G335400.1 | Wheat | plastid | 49.95 | 44.63 |
| KRG93409 | Soybean | plastid | 45.45 | 44.21 |
| KRG93411 | Soybean | plastid | 43.94 | 42.46 |
| Solyc02g087250.2.1 | Tomato | extracellular | 50.15 | 39.73 |
| GSMUA_Achr3P26360_001 | Banana | plastid | 26.63 | 34.64 |
| GSMUA_Achr3P29330_001 | Banana | cytosol, nucleus, plastid | 29.13 | 34.28 |
| GSMUA_Achr8P05570_001 | Banana | cytosol | 11.61 | 33.72 |
| GSMUA_Achr9P19190_001 | Banana | plastid | 23.82 | 30.32 |
| GSMUA_Achr8P05580_001 | Banana | plasma membrane | 16.72 | 28.64 |
| GSMUA_Achr9P12700_001 | Banana | mitochondrion | 7.61 | 20.27 |
| GSMUA_Achr2P05820_001 | Banana | cytosol | 6.51 | 19.88 |
| GSMUA_Achr3P16860_001 | Banana | mitochondrion | 7.31 | 16.33 |
| GSMUA_Achr9P19780_001 | Banana | nucleus | 8.61 | 15.19 |
Protein Annotations
| MapMan:16.12.2.1.2 | Gene3D:3.30.110.60 | GO:GO:0000372 | GO:GO:0000373 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009532 | GO:GO:0009536 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr10G01980_001 | EnsemblPlants:GSMUA_Achr10P01980_001 | EnsemblPlants:GSMUA_Achr10T01980_001 | InterPro:IPR001890 | InterPro:IPR035920 | UniProt:M0REM5 |
| PFAM:PD010559 | PFAM:PF01985 | PFscan:PS51295 | PANTHER:PTHR31846 | PANTHER:PTHR31846:SF16 | InterPro:RNA-binding_CRM |
| SMART:SM01103 | SUPFAM:SSF75471 | UniParc:UPI0002961D25 | InterPro:YhbY_like_sf | SEG:seg | : |
Description
Putative Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G01980_001]
Coordinates
chr10:-:4823499..4833106
Molecular Weight (calculated)
112020.0 Da
IEP (calculated)
9.841
GRAVY (calculated)
-0.487
Length
999 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLSHPVPIS LSSTSSSSKA PFFQSPPFLP PFTPRSALRS QNPRKRLKEV HLRTSNPTPE TLAKSAIQRI SEKLRSLGYL ENGPATAADR PATGRGSAGE
101: IFIPTSREIP SRRVGYTIDS SWSTPEHPVP EPGSGVTINR FGDLWRREKE RQAAARATKD AAAPPMVAEL TIPPEELKRL RREGVRLAKR LKVGKAGITE
201: GIVNGIHERW RRSELVKIKC EDLCRMNMKR THEILERKTG GLVIWRSGSI IILYRGVNYK YPYYYDGDKK NEIFDEVSLP SGLYNEETNK QEVNSPKMIS
301: ANSSAESPTA PARSLLVVGV GSPKKVRVQL EGEVQLEEEA DRLLDGLGPR FTDWWGCDPL PVDADLLPAV VPGFRKPLRL IPFGIKPKLT DREMTILRRL
401: GRPLPCHFAL GRSRNLQGLA VSMIKLWERC EIAKIAVKRG VQNTNSIMMA EELKQLTGGT LLSRDKEFIV FYRGKDFLPP AVSIAIEERR NYGSNKQKRN
501: SDENHPVASI NVSETKISKI TLPDEPKEGA EQIRNFALES RKTSVNVAFQ RMETRLSQAI KKKEKAEKFI SELEPLVEPP KFEVDKEAIS EEERYMLRKI
601: GLRMKPFLLL GRRGVFDGTV ENMHLHWKYR ELVKIISKDR CMKNIETAAR ILEAESGGIL VAVERVSKGY AIIVYRGKNY QRPVTLRPTT LLNRREAMIH
701: SLEAQRCESL KLHVLNISRN LNQMKHQMVQ DDSLIDSVAV DKCMTSSNVI ATTDETGFGE MEDNNSVDCE GVHDTDSEPL HVGESSDITN DMKQSVSTAF
801: DEMDYSSESS SKDKLIDLKH KDNHSDTKVA QFVLEQRAPV SSSVMGDSPV AEDTSVKEAY VEVPFKAAPL SNRERLVLRK QALKMKKRPV LAVGRNNIIS
901: GVAKTIRTHF MKYPLAIVNI KGRAKGTSVQ ELIFELEQAT GSVLVSREPN KVILYRGWGE GESPGGVRER DAKPSGVQEI VSPQLIEAIR LECGLHSTT
101: IFIPTSREIP SRRVGYTIDS SWSTPEHPVP EPGSGVTINR FGDLWRREKE RQAAARATKD AAAPPMVAEL TIPPEELKRL RREGVRLAKR LKVGKAGITE
201: GIVNGIHERW RRSELVKIKC EDLCRMNMKR THEILERKTG GLVIWRSGSI IILYRGVNYK YPYYYDGDKK NEIFDEVSLP SGLYNEETNK QEVNSPKMIS
301: ANSSAESPTA PARSLLVVGV GSPKKVRVQL EGEVQLEEEA DRLLDGLGPR FTDWWGCDPL PVDADLLPAV VPGFRKPLRL IPFGIKPKLT DREMTILRRL
401: GRPLPCHFAL GRSRNLQGLA VSMIKLWERC EIAKIAVKRG VQNTNSIMMA EELKQLTGGT LLSRDKEFIV FYRGKDFLPP AVSIAIEERR NYGSNKQKRN
501: SDENHPVASI NVSETKISKI TLPDEPKEGA EQIRNFALES RKTSVNVAFQ RMETRLSQAI KKKEKAEKFI SELEPLVEPP KFEVDKEAIS EEERYMLRKI
601: GLRMKPFLLL GRRGVFDGTV ENMHLHWKYR ELVKIISKDR CMKNIETAAR ILEAESGGIL VAVERVSKGY AIIVYRGKNY QRPVTLRPTT LLNRREAMIH
701: SLEAQRCESL KLHVLNISRN LNQMKHQMVQ DDSLIDSVAV DKCMTSSNVI ATTDETGFGE MEDNNSVDCE GVHDTDSEPL HVGESSDITN DMKQSVSTAF
801: DEMDYSSESS SKDKLIDLKH KDNHSDTKVA QFVLEQRAPV SSSVMGDSPV AEDTSVKEAY VEVPFKAAPL SNRERLVLRK QALKMKKRPV LAVGRNNIIS
901: GVAKTIRTHF MKYPLAIVNI KGRAKGTSVQ ELIFELEQAT GSVLVSREPN KVILYRGWGE GESPGGVRER DAKPSGVQEI VSPQLIEAIR LECGLHSTT
0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
Arabidopsis Description
CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.