Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G346500.1 | Wheat | plastid | 92.58 | 95.39 |
| TraesCS2D01G327400.1 | Wheat | plastid | 92.22 | 95.02 |
| HORVU2Hr1G081140.2 | Barley | plastid | 88.91 | 91.36 |
| OQU81723 | Sorghum | plastid | 67.26 | 71.96 |
| Os04t0464800-00 | Rice | plastid | 54.65 | 71.3 |
| Zm00001d025633_P007 | Maize | plastid | 65.83 | 70.84 |
| Zm00001d025629_P007 | Maize | plastid | 65.83 | 70.84 |
| Solyc08g044250.1.1 | Tomato | mitochondrion | 2.86 | 58.18 |
| PGSC0003DMT400069622 | Potato | cytosol | 11.99 | 53.39 |
| GSMUA_Achr10P... | Banana | plastid | 44.63 | 49.95 |
| CDY49049 | Canola | plastid | 40.7 | 46.62 |
| CDY37526 | Canola | plastid | 40.61 | 46.28 |
| Bra039123.1-P | Field mustard | plastid | 40.79 | 46.01 |
| VIT_14s0066g01910.t01 | Wine grape | cytosol | 42.67 | 45.69 |
| AT3G01370.1 | Thale cress | plastid | 40.88 | 45.2 |
| KRG93409 | Soybean | plastid | 39.89 | 43.43 |
| PGSC0003DMT400003527 | Potato | plastid | 39.27 | 41.85 |
| KRG93411 | Soybean | plastid | 36.58 | 39.56 |
| TraesCS4A01G150500.1 | Wheat | plastid | 24.69 | 37.15 |
| TraesCS1A01G376400.1 | Wheat | plastid | 22.54 | 35.29 |
| Solyc02g087250.2.1 | Tomato | extracellular | 39.62 | 35.13 |
| TraesCS7A01G557100.1 | Wheat | cytosol, plastid | 20.04 | 31.15 |
| TraesCS5A01G194600.1 | Wheat | plastid | 21.56 | 24.77 |
| TraesCS7A01G219200.1 | Wheat | mitochondrion | 6.98 | 23.21 |
| TraesCS3A01G499000.2 | Wheat | mitochondrion, nucleus | 7.69 | 19.82 |
| TraesCS2A01G349000.1 | Wheat | mitochondrion | 8.5 | 19.71 |
| TraesCS2A01G366200.1 | Wheat | mitochondrion | 8.32 | 19.5 |
| TraesCS1A01G108800.1 | Wheat | mitochondrion | 8.14 | 14.92 |
Protein Annotations
| MapMan:16.12.2.1.2 | Gene3D:3.30.110.60 | ncoils:Coil | GO:GO:0000372 | GO:GO:0000373 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009532 | GO:GO:0009536 |
| GO:GO:0009987 | InterPro:IPR001890 | InterPro:IPR035920 | PFAM:PF01985 | PFscan:PS51295 | PANTHER:PTHR31846 |
| PANTHER:PTHR31846:SF16 | InterPro:RNA-binding_CRM | SMART:SM01103 | SUPFAM:SSF75471 | EnsemblPlantsGene:TraesCS2A01G335400 | EnsemblPlants:TraesCS2A01G335400.1 |
| InterPro:YhbY_like_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:569274228..569283728
Molecular Weight (calculated)
124521.0 Da
IEP (calculated)
7.574
GRAVY (calculated)
-0.638
Length
1118 amino acids
Sequence
(BLAST)
(BLAST)
0001: MFFVYHLPTP YPPARGLNPL FLPRFPPHPA QMLLQFFPHP SPPILSLPVA TSRPRHPHPR LPPVRASPSP EPELLAKSAL RRISDKLRSL GYLETSPETP
0101: IPSPAPSADA PSPGEIFVPT PAQLPRHRVG STLDPSWSTG DGEADAARRR QRRGRDAAAA PTPPSAAELT LPRDELRRLQ GVGIRLRKRL KVGKPGVTEG
0201: IVNGIHERWR NAELVKIRCD DISAMNMRRT HEVLERKTGG LVIWRSGSTI ILYRGTNYKY PYFHDQQKMD DCLKDESSEQ SSSDDDDDDD EDLGFLSVEQ
0301: CSSEEDGKND TKDSIHYKDE AVENVAIVYG EQRSIGEEHE NHDILSMGQS VARKDDANYP MISSKAPVVD TQEGRSAVKI NSGAANKQHA RFHIGKNVNP
0401: PSVVRPLARS TLVTGVGSPN KFRLQLPGEV KLAKDGDKLL DGLGPRFSEW WGYDPIPVDA DLLPAIVPGF RRPFRLLPSG VPPKLTDREM TILRRLARPL
0501: PYHYALGRSS NLQGLAASMI KLWERCEVAK IAMKRGLCID SELVSEELKG LTGGTLLSRD NESIVLYRGK DFLPPAVSLA IEKRRKHDNS MINKPKPEIE
0601: ESIPTQDASE LKMANDASVH GHECHEEKHE GETSVTDYRT ESLNTVAQNM ETRLSQAIAE KKKAEKLLEE LEKASRPSKA ETRETISEEE RYMLRKVGLQ
0701: MKPFLLLGRR GVFDGTIENM HLHWKYRELV KIMCKEHSME DVTYAARTLE AESGGILVAV ERVSKGHAII MYRGKNYQRP SALRPKSLLN KKDALKRSVE
0801: LQRHKSLKLH VLNLSKNIDY LRGQMQMEGH AVVSSDQMNS GHENKGIHDL CDNSGTLGET SKEVPEVAPK CFEPESEECS SGGTNRILNT TKSGVPLDDT
0901: QNKLCLNELI DDSSEASRPC LNENSSSASS DNQIEYQNRL SFPVECHSDS GSEEDSKVFK TLSPSQALDE PILDQTYTPH LPSKAAPLSN RERLVLRKQA
1001: LQTKKRPVLA IGRNNVITGV AKTIRTHFKK HPLAIVNIKN RADGTPVQQL ISELEEATGS VLVSREPNKV ILYRGWGADV TQTSSREDGT NEGEKEVISP
1101: QLLEAIRLEC GLHPGESQ
0101: IPSPAPSADA PSPGEIFVPT PAQLPRHRVG STLDPSWSTG DGEADAARRR QRRGRDAAAA PTPPSAAELT LPRDELRRLQ GVGIRLRKRL KVGKPGVTEG
0201: IVNGIHERWR NAELVKIRCD DISAMNMRRT HEVLERKTGG LVIWRSGSTI ILYRGTNYKY PYFHDQQKMD DCLKDESSEQ SSSDDDDDDD EDLGFLSVEQ
0301: CSSEEDGKND TKDSIHYKDE AVENVAIVYG EQRSIGEEHE NHDILSMGQS VARKDDANYP MISSKAPVVD TQEGRSAVKI NSGAANKQHA RFHIGKNVNP
0401: PSVVRPLARS TLVTGVGSPN KFRLQLPGEV KLAKDGDKLL DGLGPRFSEW WGYDPIPVDA DLLPAIVPGF RRPFRLLPSG VPPKLTDREM TILRRLARPL
0501: PYHYALGRSS NLQGLAASMI KLWERCEVAK IAMKRGLCID SELVSEELKG LTGGTLLSRD NESIVLYRGK DFLPPAVSLA IEKRRKHDNS MINKPKPEIE
0601: ESIPTQDASE LKMANDASVH GHECHEEKHE GETSVTDYRT ESLNTVAQNM ETRLSQAIAE KKKAEKLLEE LEKASRPSKA ETRETISEEE RYMLRKVGLQ
0701: MKPFLLLGRR GVFDGTIENM HLHWKYRELV KIMCKEHSME DVTYAARTLE AESGGILVAV ERVSKGHAII MYRGKNYQRP SALRPKSLLN KKDALKRSVE
0801: LQRHKSLKLH VLNLSKNIDY LRGQMQMEGH AVVSSDQMNS GHENKGIHDL CDNSGTLGET SKEVPEVAPK CFEPESEECS SGGTNRILNT TKSGVPLDDT
0901: QNKLCLNELI DDSSEASRPC LNENSSSASS DNQIEYQNRL SFPVECHSDS GSEEDSKVFK TLSPSQALDE PILDQTYTPH LPSKAAPLSN RERLVLRKQA
1001: LQTKKRPVLA IGRNNVITGV AKTIRTHFKK HPLAIVNIKN RADGTPVQQL ISELEEATGS VLVSREPNKV ILYRGWGADV TQTSSREDGT NEGEKEVISP
1101: QLLEAIRLEC GLHPGESQ
0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L
Arabidopsis Description
CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.