Factsheet for PGSC0003DMT400003527

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008772
PGSC0003DMT400063189
PGSC0003DMT400071807

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01370.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT3G01370.1	PGSC0003DMT400008772	AT4G39050.1	21798944
AT3G01370.1	PGSC0003DMT400071807	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069622	Potato	cytosol	21.16	88.45
Solyc02g087250.2.1	Tomato	extracellular	95.42	79.38
VIT_14s0066g01910.t01	Wine grape	cytosol	55.86	56.13
CDY49049	Canola	plastid	51.29	55.12
CDY37526	Canola	plastid	50.81	54.33
Bra039123.1-P	Field mustard	plastid	51.29	54.29
AT3G01370.1	Thale cress	plastid	52.05	54.01
GSMUA_Achr10P...	Banana	plastid	46.62	48.95
KRG93409	Soybean	plastid	47.86	48.88
KRG93411	Soybean	plastid	45.66	46.33
Os04t0464800-00	Rice	plastid	34.7	42.47
OQU81723	Sorghum	plastid	42.04	42.2
Zm00001d025633_P007	Maize	plastid	41.75	42.16
Zm00001d025629_P007	Maize	plastid	41.75	42.16
HORVU2Hr1G081140.2	Barley	plastid	42.14	40.62
TraesCS2B01G346500.1	Wheat	plastid	41.94	40.55
TraesCS2D01G327400.1	Wheat	plastid	41.75	40.37
TraesCS2A01G335400.1	Wheat	plastid	41.85	39.27
PGSC0003DMT400014644	Potato	plastid	26.41	33.62
PGSC0003DMT400056675	Potato	cytosol, plastid	25.55	32.76
PGSC0003DMT400002898	Potato	mitochondrion	27.07	32.16
PGSC0003DMT400067878	Potato	plastid	22.69	29.68
PGSC0003DMT400032783	Potato	mitochondrion	7.05	26.71
PGSC0003DMT400030768	Potato	mitochondrion	7.53	21.47
PGSC0003DMT400039655	Potato	mitochondrion, plastid	7.34	19.44
PGSC0003DMT400071187	Potato	mitochondrion	8.29	18.75
PGSC0003DMT400015748	Potato	nucleus, plastid	8.39	16.51

Protein Annotations

EntrezGene:102578249	MapMan:16.12.2.1.2	Gene3D:3.30.110.60	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	UniProt:M0ZLU8	PFAM:PD010559
PFAM:PF01985	EnsemblPlantsGene:PGSC0003DMG400001391	PGSC:PGSC0003DMG400001391	EnsemblPlants:PGSC0003DMT400003527	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF16	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000296B220	RefSeq:XP_006338518.1
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

CFM2 [Source:PGSC_GENE;Acc:PGSC0003DMG400001391]

Coordinates

chr2:+:46721835..46729249

Molecular Weight (calculated)

117842.0 Da

IEP (calculated)

9.845

GRAVY (calculated)

-0.647

Length

1049 amino acids

Sequence
(BLAST)

0001: MLLPFCNFHP INPSKTLLNP SPSHSLFSTT PSFSLKPFFP RNTLPVFATS PDTEALPESA IRRIADKLRS LGFVEEPKNQ ETQENALSSN PTANSPGQIF
0101: VPLPTQLPKY RVGHTLDTSW STPENPVPQP GLGNSIQKFH ELRDEFLKEK EKERLKNKEY KKERAPSLAE LTLPAEELRR LRTVGIALRK KLKIGKAGIT
0201: EGIVNGIHER WRRMELVKIT CEDICRLNMK RTHELLEKKT GGLVIWRSGS NIILYRGADY KYPYFSEISF ENNSAQDATP DLFMGTEEHM TNSSGTDVVK
0301: PDASDRKSPP RVIQGVGSPD RVRFELPGEA EHTEEADKLL EGLGPRFTDW WGCEPLPIDA DLLPAIVPGY KRPFRLLPYG VKPKLTNDEM TTLRRLGRPL
0401: PCHFVLGRNR KLQGLAAAIV KLWEKCEIAK VAVKRGVQNT NSELMAEELK WLTGGTLLSR DREFIVFYRG KDFLPSAVSS AIEERRKQVF EEEKRNGFNS
0501: SVANAKERKQ STTGSVSDDG HARRNNQKGV QEKKKLTSME AAIKRTADKL TTALEKKAEA ENLLLELEED EVPQQSDMDK EGITEEERFM LRKIGLRMKP
0601: FLLLGRRGVF DGTVENMHLH WKYRELVKVI TGRKTIEEVH QIARMLEAES GGILVAVELV NKGHAIIVYR GKNYERPASL RPQTLLSKRE AMKRSIEAQR
0701: RQSLKLHVLK LTQNIEALQS RLAKNEEMVH IQSPDIVDRQ VPVTGISDAA GGTNYQSSSA SPTEDSGDAA EDTDPSSQKE LSSDSSDTDH NSQQEFPIDP
0801: FFQYEGKVEA VGDTIQPEHQ SISSIKESKS MFNVNVDQKT FGSAVSESVS KSSRGEVKIH FSETRSFNKP REVDDKKEVS QLPSVKPQQA LRSTRSRSEG
0901: MPTRKVQLSN RERLLLRKQA LKMKKQPVLA VGRSNIVTGV AKNIKEHFKK YPLAIVNVKG RAKGTSVREV VFKLEQATGA VLVSQEPSKV ILYRGWGPGG
1001: ERGASNGNDT RNSRNSREQK ELMSISPELI SAIRLECGLQ SNHDMEVAS

Best Arabidopsis Sequence Match ( AT3G01370.1 )
(BLAST)

0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L

Arabidopsis Description

CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.