Factsheet for PGSC0003DMT400030768

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005270.2.1	Tomato	mitochondrion	95.11	95.63
PGSC0003DMT400039655	Potato	mitochondrion, plastid	85.6	79.55
Bra011945.1-P	Field mustard	mitochondrion	36.14	68.91
Bra000492.1-P	Field mustard	mitochondrion	60.6	62.99
AT2G28480.1	Thale cress	mitochondrion	62.5	61.83
KRH29618	Soybean	nucleus	46.74	60.56
CDX83289	Canola	mitochondrion	60.05	59.41
CDY31205	Canola	mitochondrion	60.05	59.41
VIT_05s0102g00700.t01	Wine grape	plastid	64.13	56.73
KRH24621	Soybean	mitochondrion	63.04	54.33
TraesCS3D01G505800.1	Wheat	mitochondrion	55.98	52.42
TraesCS3B01G562100.1	Wheat	mitochondrion	55.98	52.02
EES02081	Sorghum	mitochondrion	57.07	51.85
Zm00001d042043_P001	Maize	mitochondrion	55.43	51.78
HORVU3Hr1G110360.1	Barley	mitochondrion	55.71	51.25
Os01t0958400-02	Rice	mitochondrion	56.25	49.64
CDY15751	Canola	mitochondrion, plastid, vacuole	46.47	49.28
GSMUA_Achr3P16860_001	Banana	mitochondrion	59.24	48.77
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	55.71	47.23
PGSC0003DMT400032783	Potato	mitochondrion	33.7	44.77
PGSC0003DMT400071187	Potato	mitochondrion	30.98	24.57
PGSC0003DMT400015748	Potato	nucleus, plastid	25.54	17.64
PGSC0003DMT400069622	Potato	cytosol	10.05	14.74
PGSC0003DMT400014644	Potato	plastid	22.55	10.07
PGSC0003DMT400002898	Potato	mitochondrion	21.74	9.06
PGSC0003DMT400067878	Potato	plastid	18.21	8.35
PGSC0003DMT400056675	Potato	cytosol, plastid	18.48	8.31
PGSC0003DMT400003527	Potato	plastid	21.47	7.53

Protein Annotations

EntrezGene:102582601	Gene3D:3.30.110.60	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	UniProt:M1AUR5	PFAM:PF01985
EnsemblPlantsGene:PGSC0003DMG400011786	PGSC:PGSC0003DMG400011786	EnsemblPlants:PGSC0003DMT400030768	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF2
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000296D10E	RefSeq:XP_015158981.1	RefSeq:XP_015158982.1
RefSeq:XP_015158983.1	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

Group II intron splicing factor CRS1 [Source:PGSC_GENE;Acc:PGSC0003DMG400011786]

Coordinates

chr9:+:8761610..8769935

Molecular Weight (calculated)

42619.2 Da

IEP (calculated)

10.417

GRAVY (calculated)

-0.833

Length

368 amino acids

Sequence
(BLAST)

001: MAIPLFRGFR RLPLLSLHRP LSSSSTSYRP ILGNPESFLH LSRFVPQNSL IRQNPCWDLR NFSHGSVNFV ITKDGKPKFE THEVEAPKKE KWKTKKRLKL
101: QRKREKKKRN AANKRDPRRL GLKGKKKKQK FDTAEERIKQ KIENAKVKEA LLIERLKRYE VSKVQGPEVK PHFLTGEERF YIKKMGQKRS NYVPIGRRGV
201: FGGVILNMHL HWKRHETVKV ICKPGEVQEY ADEIARLSGG IPIQIIADDT IVFYRGRDYV QPEIMSPIDT LSKKKALEKS KYEQSLESVR RFIAIAEKEL
301: ELYYRHVALY GDPSNRSAYS ILDDSRSTRG KRNAEIGEEN YSASESNLSD LELSEIDDSC SDDNQSSS

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.