Factsheet for PGSC0003DMT400067878

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086200.1.1	Tomato	plastid	95.01	95.01
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	28.3	56.61
KRH01727	Soybean	plastid	50.25	53.95
AT5G16180.1	Thale cress	endoplasmic reticulum	47.01	52.36
HORVU1Hr1G001270.1	Barley	cytosol, nucleus	7.73	50.82
KRH70401	Soybean	plastid	35.29	48.21
Os08t0360100-01	Rice	plastid	39.15	43.31
EES13710	Sorghum	plastid	39.28	43.27
GSMUA_Achr9P19190_001	Banana	plastid	42.14	43.06
TraesCS7A01G557100.1	Wheat	cytosol, plastid	38.53	42.98
TraesCS7D01G553500.1	Wheat	plastid	38.9	42.8
TraesCS7B01G481800.1	Wheat	cytosol, plastid	38.9	42.8
PGSC0003DMT400069622	Potato	cytosol	12.97	41.43
Zm00001d032373_P004	Maize	plastid	39.4	40.67
CDX85512	Canola	golgi	44.39	32.48
Bra023555.1-P	Field mustard	golgi	44.26	32.27
CDY38130	Canola	golgi	43.89	31.91
PGSC0003DMT400014644	Potato	plastid	31.67	30.83
PGSC0003DMT400056675	Potato	cytosol, plastid	29.43	28.85
PGSC0003DMT400002898	Potato	mitochondrion	30.17	27.41
PGSC0003DMT400032783	Potato	mitochondrion	9.23	26.71
PGSC0003DMT400003527	Potato	plastid	29.68	22.69
PGSC0003DMT400030768	Potato	mitochondrion	8.35	18.21
PGSC0003DMT400039655	Potato	mitochondrion, plastid	7.98	16.16
PGSC0003DMT400071187	Potato	mitochondrion	8.98	15.52
PGSC0003DMT400015748	Potato	nucleus, plastid	8.23	12.38

Protein Annotations

EntrezGene:102587090	MapMan:16.12.2.1.1.8	Gene3D:3.30.110.60	ncoils:Coil	GO:GO:0000373	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	UniProt:M1CI08	PFAM:PF01985	EnsemblPlantsGene:PGSC0003DMG401026400
PGSC:PGSC0003DMG401026400	EnsemblPlants:PGSC0003DMT400067878	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF10	InterPro:RNA-binding_CRM
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000296924B	RefSeq:XP_006357840.1	RefSeq:XP_015169107.1	RefSeq:XP_015169108.1
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

CRS1 (ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1) [Source:PGSC_GENE;Acc:PGSC0003DMG401026400]

Coordinates

chr2:+:41432292..41438630

Molecular Weight (calculated)

91366.2 Da

IEP (calculated)

9.427

GRAVY (calculated)

-0.500

Length

802 amino acids

Sequence
(BLAST)

001: MSAPLVLAPN SNTLCYHHSN SFINQKTLLF SKSFNSKFTS FSSQYNDNNN PIKNEEQYNL EFENQDYGSS SSGIKGPTAP WMRGPLLLEP NQFLDLSKSR
101: KKKDANFAKT QNPNDALSGK VSGGRGKKAM KMIYQGIDKL QETQIGEGTQ VETDAKVEFQ FPPGSLSEWG DVSYEIEEKN PYGEEDNVES LEGVEFGVLS
201: REGEGRGSRK IGVKMPWESE VRIVYRRMKK EKVVMTAESN LDAMLLERLR GEAARIQKWV KVKKAGVTRT VVDQIHFIWK NNELAMLKFD LPLCRNMDRA
301: REIVEMKTGG FVVWMKQNAL VVYRGCSYTL QQKELQHDFL CSHQNSSFTE NIKQTSIFSP LNSSGSSEDE MISVGNSEED SLAMNESLYV REANRLLDDL
401: GPRYVDWWWP KPLPVNADLL PEVVPGFKPP FRLCPPRSRS KLTDDELTQL RKLARSLPTH FVLGRNRKLQ GLAAAVVKLW EKCHIAKIAL KWGIPNTSNE
501: LMANELKYLT GGVLLLRNKF FIILYRGKDF LPSQVANLVA EREVELTRCQ LEEEVARFKA IETLPITMEV SMSSSSVGTL SEFQTIAEPG KEKSEVEVQL
601: MSEKERLEKE LRNQQNNLHI LKKKIEKSSI ALGKLNAAWR PAKEDDDKEI LTQEERRSLR QIGLKMDRSL VLGRRGVFDG VLAGLHQHWK HREVIKVITM
701: QKIFSQVIHT AKLLETESGG ILISVDKIKE GHAIIIYRGK NYRRPELVPQ NLLNKRQALC RSLEMQRLGS LKFYANQTEQ AISDLKLKLV EYTVKIGQMG
801: EI

Best Arabidopsis Sequence Match ( AT5G16180.1 )
(BLAST)

001: MRNGINILSY PRFLSFCEVF VLLLCNFSDN PKLQTFTQML NSLFLSARAF PSLITNSSSR RAKSSQFDQF RENRGVSDAA IKVPTAPWMK GPLLLRPDEI
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF

Arabidopsis Description

CRS1Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF10]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.