Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01727 | Soybean | plastid | 53.61 | 51.67 |
| CDX85512 | Canola | golgi | 78.06 | 51.28 |
| CDY38130 | Canola | golgi | 78.33 | 51.13 |
| Bra023555.1-P | Field mustard | golgi | 77.92 | 51.0 |
| VIT_14s0006g02670.t01 | Wine grape | mitochondrion | 13.33 | 50.79 |
| PGSC0003DMT400067878 | Potato | plastid | 52.36 | 47.01 |
| Solyc02g086200.1.1 | Tomato | plastid | 52.08 | 46.76 |
| KRH70401 | Soybean | plastid | 36.94 | 45.32 |
| HORVU1Hr1G001270.1 | Barley | cytosol, nucleus | 7.22 | 42.62 |
| TraesCS7A01G557100.1 | Wheat | cytosol, plastid | 41.39 | 41.45 |
| EES13710 | Sorghum | plastid | 41.39 | 40.93 |
| GSMUA_Achr9P19190_001 | Banana | plastid | 44.31 | 40.64 |
| Os08t0360100-01 | Rice | plastid | 40.69 | 40.41 |
| TraesCS7D01G553500.1 | Wheat | plastid | 40.83 | 40.33 |
| TraesCS7B01G481800.1 | Wheat | cytosol, plastid | 40.69 | 40.19 |
| Zm00001d032373_P004 | Maize | plastid | 41.53 | 38.48 |
| AT3G18390.1 | Thale cress | plastid | 35.28 | 29.95 |
| AT3G23070.1 | Thale cress | plastid | 32.22 | 26.33 |
| AT4G29750.1 | Thale cress | plastid | 30.56 | 26.16 |
| AT4G14510.1 | Thale cress | plastid | 31.39 | 24.92 |
| AT3G01370.1 | Thale cress | plastid | 31.81 | 22.65 |
| AT4G13070.1 | Thale cress | mitochondrion | 10.56 | 22.16 |
| AT2G28480.1 | Thale cress | mitochondrion | 9.58 | 18.55 |
| AT3G25440.1 | Thale cress | plastid | 9.72 | 15.77 |
| AT3G27550.2 | Thale cress | mitochondrion | 8.89 | 11.7 |
Protein Annotations
| MapMan:16.12.2.1.1.8 | Gene3D:3.30.110.60 | EntrezGene:831476 | ProteinID:AED92258.1 | ArrayExpress:AT5G16180 | EnsemblPlantsGene:AT5G16180 |
| RefSeq:AT5G16180 | TAIR:AT5G16180 | RefSeq:AT5G16180-TAIR-G | EnsemblPlants:AT5G16180.1 | TAIR:AT5G16180.1 | Unigene:At.54863 |
| ProteinID:CAC01859.1 | Symbol:CRS1 | ncoils:Coil | GO:GO:0000373 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR001890 | InterPro:IPR035920 | RefSeq:NP_197122.2 | PFAM:PF01985 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51295 | PANTHER:PTHR31846 | PANTHER:PTHR31846:SF10 | UniProt:Q9LF10 | InterPro:RNA-binding_CRM | SMART:SM01103 |
| SUPFAM:SSF75471 | UniParc:UPI00017394E2 | InterPro:YhbY_like_sf | SEG:seg | : | : |
Description
CRS1Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF10]
Coordinates
chr5:+:5279884..5283102
Molecular Weight (calculated)
83595.6 Da
IEP (calculated)
9.954
GRAVY (calculated)
-0.529
Length
720 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNGINILSY PRFLSFCEVF VLLLCNFSDN PKLQTFTQML NSLFLSARAF PSLITNSSSR RAKSSQFDQF RENRGVSDAA IKVPTAPWMK GPLLLRPDEI
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.