Factsheet for AT3G25440.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27892	Canola	plastid	78.6	80.05
Bra015127.1-P	Field mustard	plastid	77.7	79.31
CDY00840	Canola	plastid	77.93	78.28
VIT_12s0035g00830.t01	Wine grape	nucleus	47.52	63.75
GSMUA_Achr2P05820_001	Banana	cytosol	42.57	57.8
KRH69093	Soybean	mitochondrion	52.48	52.13
Solyc06g082990.2.1	Tomato	mitochondrion	53.6	51.52
PGSC0003DMT400071187	Potato	mitochondrion	53.83	51.51
Os04t0492900-03	Rice	mitochondrion	49.77	46.14
Zm00001d003196_P001	Maize	mitochondrion	49.55	45.36
KRH71856	Soybean	nucleus	52.7	45.17
TraesCS2B01G367400.1	Wheat	mitochondrion	47.97	44.28
KXG26557	Sorghum	mitochondrion	49.77	44.02
TraesCS2A01G366200.1	Wheat	mitochondrion	47.07	43.82
TraesCS2A01G349000.1	Wheat	mitochondrion	47.52	43.78
HORVU2Hr1G084980.4	Barley	plastid	48.42	38.26
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	47.3	36.46
AT4G13070.1	Thale cress	mitochondrion	23.87	30.9
AT2G28480.1	Thale cress	mitochondrion	24.77	29.57
AT3G27550.2	Thale cress	mitochondrion	25.9	21.02
AT3G23070.1	Thale cress	plastid	21.62	10.9
AT4G14510.1	Thale cress	plastid	22.07	10.8
AT3G18390.1	Thale cress	plastid	19.82	10.38
AT4G29750.1	Thale cress	plastid	19.37	10.23
AT5G16180.1	Thale cress	endoplasmic reticulum	15.77	9.72
AT3G01370.1	Thale cress	plastid	20.05	8.8

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EntrezGene:822128	ProteinID:AEE77011.1	ProteinID:AEE77012.1	EMBL:AK176804
ProteinID:ANM65059.1	ProteinID:ANM65060.1	ProteinID:ANM65061.1	ArrayExpress:AT3G25440	EnsemblPlantsGene:AT3G25440	RefSeq:AT3G25440
TAIR:AT3G25440	RefSeq:AT3G25440-TAIR-G	EnsemblPlants:AT3G25440.1	TAIR:AT3G25440.1	Unigene:At.37388	ProteinID:BAB01314.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR001890
InterPro:IPR035920	RefSeq:NP_001078207.1	RefSeq:NP_001327056.1	RefSeq:NP_001327057.1	RefSeq:NP_001327058.1	RefSeq:NP_189171.2
PFAM:PF01985	PO:PO:0000037	PO:PO:0000293	PO:PO:0001078	PO:PO:0007611	PO:PO:0009009
PO:PO:0009010	PO:PO:0009046	PO:PO:0025022	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF5
UniProt:Q67XL4	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000042BC7D	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]

Coordinates

chr3:+:9223973..9225774

Molecular Weight (calculated)

51477.5 Da

IEP (calculated)

8.723

GRAVY (calculated)

-0.792

Length

444 amino acids

Sequence
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.