Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G349000.1 | Wheat | mitochondrion | 75.87 | 90.66 |
| TraesCS2B01G367400.1 | Wheat | mitochondrion | 72.74 | 87.11 |
| HORVU2Hr1G084980.4 | Barley | plastid | 73.44 | 75.27 |
| Os04t0492900-03 | Rice | mitochondrion | 60.76 | 73.07 |
| KXG26557 | Sorghum | mitochondrion | 60.07 | 68.92 |
| Zm00001d003196_P001 | Maize | mitochondrion | 57.81 | 68.66 |
| GSMUA_Achr2P05820_001 | Banana | cytosol | 37.5 | 66.06 |
| VIT_12s0035g00830.t01 | Wine grape | nucleus | 34.2 | 59.52 |
| KRH69093 | Soybean | mitochondrion | 39.58 | 51.01 |
| PGSC0003DMT400071187 | Potato | mitochondrion | 40.45 | 50.22 |
| Solyc06g082990.2.1 | Tomato | mitochondrion | 40.1 | 50.0 |
| Bra015127.1-P | Field mustard | plastid | 37.33 | 49.43 |
| CDY27892 | Canola | plastid | 37.33 | 49.31 |
| CDY00840 | Canola | plastid | 37.67 | 49.09 |
| AT3G25440.1 | Thale cress | plastid | 36.46 | 47.3 |
| KRH71856 | Soybean | nucleus | 39.41 | 43.82 |
| TraesCS7D01G222900.1 | Wheat | mitochondrion | 19.44 | 33.33 |
| TraesCS3D01G505800.1 | Wheat | mitochondrion | 19.97 | 29.26 |
| TraesCS1D01G090300.1 | Wheat | mitochondrion | 18.06 | 17.08 |
| TraesCS1D01G383500.1 | Wheat | mitochondrion, plastid | 16.67 | 12.32 |
| TraesCS7D01G553500.1 | Wheat | plastid | 13.72 | 10.84 |
| TraesCS4D01G150700.1 | Wheat | plastid | 15.45 | 10.45 |
| TraesCS5D01G197600.1 | Wheat | plastid | 15.62 | 9.96 |
| TraesCS2D01G327400.1 | Wheat | plastid | 16.67 | 8.85 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G347400.2 | EnsemblPlantsGene:TraesCS2D01G347400 | Gene3D:3.30.110.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR001890 | InterPro:IPR035920 | InterPro:RNA-binding_CRM | InterPro:YhbY_like_sf | ncoils:Coil |
| PANTHER:PTHR31426 | PANTHER:PTHR31426:SF5 | PFAM:PF01985 | PFscan:PS51295 | SEG:seg | SMART:SM01103 |
| SUPFAM:SSF75471 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:445397954..445401033
Molecular Weight (calculated)
65003.1 Da
IEP (calculated)
9.951
GRAVY (calculated)
-0.764
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MHFVSPLCFA FLRPTLARRR PRSSPQDSRT LSQCPLAESP FTTPVSIPAQ RISYRAHHAG SPPESARAPP QRPRTIHPST RARGRTGSLE LSPYGATGVH
101: GRSAPLAPAG HKDVAPPAFT TSAPLPLVRQ RRRDGAFPRN NEAQRTTSAV FYQDDRFFSW PRSYNLQTCC SVHTSRPVNS QNQDTATGPQ NTGAMVSVDD
201: SGKPKAKRKK LKGKRAVTRF LKSLRWKKER EFQRMTAEEK ILKKLKLARK KEERLLAALK KIEPNDPSEP THDPEVLTPE EHFYFLKMGQ KSKNYVPVGR
301: RGIYQGVILN MHLHWKKHQT LQVIVKTFTP EEVKEIASEL AVLSGGIVLS IEEGNTIIMY RGKNYAQPPP EIMSPKVALP RKKALDKSKY RDRLRALRRY
401: IPRLEQELEY QHALMKLAGG HIGQSAAKDI AFISDSTNSV SVNKDSSSSV YKGTVSELLS ESVERSEKLA DENSEVDDDS TSESITYSES EDLSDMFETD
501: SEEQAEDSKE RPLYLDRLDK FLPEKVDNES DDFEEHLRKI ASLSDKADSP AKELKISELD EIDKIFLRAS SLLKKR
101: GRSAPLAPAG HKDVAPPAFT TSAPLPLVRQ RRRDGAFPRN NEAQRTTSAV FYQDDRFFSW PRSYNLQTCC SVHTSRPVNS QNQDTATGPQ NTGAMVSVDD
201: SGKPKAKRKK LKGKRAVTRF LKSLRWKKER EFQRMTAEEK ILKKLKLARK KEERLLAALK KIEPNDPSEP THDPEVLTPE EHFYFLKMGQ KSKNYVPVGR
301: RGIYQGVILN MHLHWKKHQT LQVIVKTFTP EEVKEIASEL AVLSGGIVLS IEEGNTIIMY RGKNYAQPPP EIMSPKVALP RKKALDKSKY RDRLRALRRY
401: IPRLEQELEY QHALMKLAGG HIGQSAAKDI AFISDSTNSV SVNKDSSSSV YKGTVSELLS ESVERSEKLA DENSEVDDDS TSESITYSES EDLSDMFETD
501: SEEQAEDSKE RPLYLDRLDK FLPEKVDNES DDFEEHLRKI ASLSDKADSP AKELKISELD EIDKIFLRAS SLLKKR
001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR
Arabidopsis Description
Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.