Factsheet for Zm00001d003196_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26557	Sorghum	mitochondrion	90.1	87.05
Os04t0492900-03	Rice	mitochondrion	72.37	73.28
TraesCS2B01G367400.1	Wheat	mitochondrion	72.16	72.77
TraesCS2A01G349000.1	Wheat	mitochondrion	72.16	72.61
TraesCS2A01G366200.1	Wheat	mitochondrion	70.1	71.28
GSMUA_Achr2P05820_001	Banana	cytosol	45.57	67.58
HORVU2Hr1G084980.4	Barley	plastid	73.2	63.17
VIT_12s0035g00830.t01	Wine grape	nucleus	40.82	59.82
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	68.66	57.81
CDY00840	Canola	plastid	47.42	52.04
PGSC0003DMT400071187	Potato	mitochondrion	49.69	51.94
CDY27892	Canola	plastid	46.6	51.83
Solyc06g082990.2.1	Tomato	mitochondrion	49.07	51.52
Bra015127.1-P	Field mustard	plastid	46.19	51.49
KRH69093	Soybean	mitochondrion	47.42	51.45
AT3G25440.1	Thale cress	plastid	45.36	49.55
KRH71856	Soybean	nucleus	46.39	43.44
Zm00001d025706_P002	Maize	mitochondrion	24.33	34.91
Zm00001d042043_P001	Maize	mitochondrion	24.54	30.2
Zm00001d010884_P001	Maize	mitochondrion	22.06	16.59
Zm00001d024823_P001	Maize	mitochondrion	22.06	16.36
Zm00001d038922_P001	Maize	extracellular	19.79	12.08
Zm00001d007572_P001	Maize	plastid	19.59	11.28
Zm00001d032373_P004	Maize	plastid	16.08	10.04
Zm00001d020230_P006	Maize	plastid	17.53	8.82
Zm00001d025629_P007	Maize	plastid	17.73	8.28
Zm00001d025633_P007	Maize	plastid	17.73	8.28

Protein Annotations

EntrezGene:100193495	Gene3D:3.30.110.60	MapMan:35.1	UniProt:B4FF75	EMBL:BT035763	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920
ProteinID:ONM16341.1	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF5	InterPro:RNA-binding_CRM
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00017B6552	InterPro:YhbY_like_sf	EnsemblPlantsGene:Zm00001d003196	EnsemblPlants:Zm00001d003196_P001
EnsemblPlants:Zm00001d003196_T001	SEG:seg	:	:	:	:

Description

RNA-binding CRS1 / YhbY (CRM) domain protein

Coordinates

chr2:-:35307945..35310918

Molecular Weight (calculated)

55502.2 Da

IEP (calculated)

9.446

GRAVY (calculated)

-0.796

Length

485 amino acids

Sequence
(BLAST)

001: MASRLFVLRR HTRWWQRQAP RPRSLCPPSH GGDSASSHGT LELLARLRSS PSYTFHKVFN RDARFFRLLQ SCSIQACHCI HTSPSVNSGN QATAEPQQQN
101: PGVPVPVDGS SELKPKRTKL KGRRAVTNFL KSLRWKKKKE FQRMTAEEKI LYKLKLARKK EERLVVALKK IEPEDPSEPT HDPEVLTPEE HFYFLKMGQK
201: CKNYVPVGRR GIYQGVILNM HLHWKKHQTL QVIVKTFTPE EVKEIAIELA TLSGGIVLDI QDGNTIIMYR GKNYAQPPPE IMSPKVSLSR KKALDKSKYM
301: EKLRALRRYI PRLEQELEDL HAQMKLAGEH QGQNAGKHVA SISHNTNSMP VRKEPCGSIR NKTVSDLLSE TVEGSKRLED ESSAIEDDSA SESLSFTESE
401: DLSDIFETES EEQEEDNKDR PLYLDRLDKF PSGKNDNEPD DFEEHLRRIA SLSDKTDSPS KELKVSELDE IDKIFLRASS LLKKR

Best Arabidopsis Sequence Match ( AT3G25440.1 )
(BLAST)

001: MGFLTAAIRV STSAASMLLR RKSRQLGFLA SSSPLFSSFN SMNRTISSCN IVCKVLHKES LTRPMWNVSF LRSSSFHSTP ARETGDDDIS KSENSSSQDG
101: DSCTKLKRKK LKGKRAVVRW LKFFRWKKKK EFERMTSEEK ILNKLRKARK KEERLMETMK KLEPSESAET THDPEILTPE EHFYYLKMGL KCKNYVPVGR
201: RGIYQGVILN MHLHWKKHQT LQVVIKTFTP DEVKEIAVEL ARLTGGIVLD VHEGNTIIMY RGKNYVQPPT EIMSPRITLP RKKALDKSKC RDALRAVRKY
301: IPRLEQELQL LQAQAETKRD YTNVKVDDNQ ERSEELKKII ERSEECLEDE QEEDEAGLEL ATDSDLSDIF ETDSELEDAK TERPLFLEEF EKFPAINNRE
401: DEDFGDLGKA KSEGEENDDD KSPNFDEVDK MFLRAAFLLK KKRR

Arabidopsis Description

Uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q67XL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.