Factsheet for Zm00001d007572_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83762	Sorghum	cytosol, nucleus, plastid	87.17	85.85
TraesCS4A01G150500.1	Wheat	plastid	68.53	77.66
TraesCS4D01G150700.1	Wheat	plastid	74.58	73.71
TraesCS4B01G161000.1	Wheat	plastid	74.23	73.27
Os11t0592400-00	Rice	plastid	75.42	71.67
HORVU7Hr1G052190.1	Barley	plastid	74.35	70.58
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	53.33	52.89
KRG92332	Soybean	plastid	50.83	51.26
KRH34465	Soybean	plastid	47.15	49.32
PGSC0003DMT400002898	Potato	mitochondrion	51.19	48.81
Solyc09g083350.2.1	Tomato	mitochondrion	51.07	48.7
VIT_05s0020g04770.t01	Wine grape	plastid	52.14	48.67
CDY10696	Canola	plastid	48.22	47.43
CDY10350	Canola	plastid	48.22	46.83
Bra033883.1-P	Field mustard	mitochondrion	48.1	46.77
AT3G23070.1	Thale cress	plastid	48.1	45.97
Bra036865.1-P	Field mustard	plastid	45.61	44.65
CDY16286	Canola	plastid	45.61	44.6
CDY29740	Canola	plastid	46.44	44.53
CDY70711	Canola	nucleus	13.06	42.8
AT4G14510.1	Thale cress	plastid	45.49	42.23
Zm00001d038922_P001	Maize	extracellular	35.04	37.11
Zm00001d020230_P006	Maize	plastid	38.95	34.02
Zm00001d032373_P004	Maize	plastid	28.03	30.37
Zm00001d025629_P007	Maize	plastid	34.8	28.2
Zm00001d025633_P007	Maize	plastid	34.8	28.2
Zm00001d025706_P002	Maize	mitochondrion	10.33	25.74
Bra036994.1-P	Field mustard	nucleus	19.95	22.67
Zm00001d042043_P001	Maize	mitochondrion	10.33	22.08
Zm00001d003196_P001	Maize	mitochondrion	11.28	19.59
Zm00001d010884_P001	Maize	mitochondrion	9.74	12.71
Zm00001d024823_P001	Maize	mitochondrion	9.62	12.39

Protein Annotations

EntrezGene:100126360	MapMan:16.12.2.1.3	Gene3D:3.30.110.60	UniProt:A0A1D6F794	UniProt:A7XN92	InterPro:CFM3
ncoils:Coil	EMBL:EU084957	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0030529	InterPro:IPR001890	InterPro:IPR035920
ProteinID:ONM27110.1	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00015C317C	InterPro:YhbY_like_sf	EnsemblPlantsGene:Zm00001d007572	EnsemblPlants:Zm00001d007572_P001
EnsemblPlants:Zm00001d007572_T001	SEG:seg	:	:	:	:

Description

CRM family member3 CRM family member3

Coordinates

chr2:-:235053907..235060019

Molecular Weight (calculated)

94064.9 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.676

Length

842 amino acids

Sequence
(BLAST)

001: MAMASSPACH FRHPPRLRLL LPLSTSAPHP WLYSWSHPRQ RGRLRAPPAA LDLRPEPSPS SDSDDEDAVG ASRSSGRSTM SLILSRLRRA GYSGEDPRAA
101: APPHPPRGSV EDVFRADDGV LPNARGGFDA DDEERALGDA RFPWERPMPP PEAAPRSARS PTWMAELTLP AAELRRLRHA AIRIKSRTKV GGAGVTREIV
201: EKIKEKWKTE EVVRVKVSGT PALNMRLFHE ILERKTGGLV IWRSGTSVSL YRGVDYDEPE PTKKSKKNSQ SLAMDFPIKG SSNPSLLPTE TANSVRDSNV
301: ALVSNAAKEE LVVQAPEIKY EDEIDKLLDE LGPRYTDWPG SDPLPVDADL LPANMPGYKP PFRVLPYGVR PSLSRRDTTN LRRLARGLPP HFALGRSRQL
401: QGLANAMVKL WEKSSIAKIA LKRGVQLTTS ERMAEDIKKL TGGVMLSRNN EFIVFYRGKD FLSSELAEVL LERERLAKSL QDEEEARRKA ASYFSSAETY
501: AQPTVAGTLG ETLEANSKYG TKHDENHADK MARTIEAARH ADLVRKLEWK LSLAQKKMEK AERVLGKVET ALRPTEDSRP PETITDEERF MFRKLGLRMK
601: AFLLLGRRGV FDGTIENMHL HWKYRELVKI LVKAKSFADV KRIALSLEAE SGGILVSVDK VSKGYAIVVF RGKNYRRPSS LRPRNLLSKR KALARSIELQ
701: RHQALSRHFA KLNRKVERLK AELVQMEDVK EQGDEELYAK LDAAYSSDDE DMEDEDDEAY LKRFDNEVAG ATADDDGSDD YTSAADEADY PDSDDEAGDC
801: SEDEGEDDED EAAAGVSDAG FHGEVVGFSS DTDRRNHDVN EY

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.