Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G150500.1 | Wheat | plastid | 79.48 | 94.89 |
| TraesCS4B01G161000.1 | Wheat | plastid | 91.09 | 94.72 |
| TraesCS4D01G150700.1 | Wheat | plastid | 90.76 | 94.48 |
| Zm00001d007572_P001 | Maize | plastid | 70.58 | 74.35 |
| OQU83762 | Sorghum | cytosol, nucleus, plastid | 70.24 | 72.87 |
| Os11t0592400-00 | Rice | plastid | 71.03 | 71.11 |
| GSMUA_Achr3P29330_001 | Banana | cytosol, nucleus, plastid | 50.85 | 53.12 |
| KRG92332 | Soybean | plastid | 48.03 | 51.02 |
| VIT_05s0020g04770.t01 | Wine grape | plastid | 50.96 | 50.11 |
| PGSC0003DMT400002898 | Potato | mitochondrion | 49.38 | 49.6 |
| Solyc09g083350.2.1 | Tomato | mitochondrion | 49.15 | 49.38 |
| KRH34465 | Soybean | plastid | 44.42 | 48.94 |
| CDY10696 | Canola | plastid | 46.9 | 48.6 |
| AT3G23070.1 | Thale cress | plastid | 48.25 | 48.58 |
| Bra033883.1-P | Field mustard | mitochondrion | 46.9 | 48.04 |
| CDY10350 | Canola | plastid | 46.9 | 47.98 |
| CDY16286 | Canola | plastid | 45.1 | 46.46 |
| Bra036865.1-P | Field mustard | plastid | 44.64 | 46.05 |
| CDY29740 | Canola | plastid | 45.32 | 45.79 |
| AT4G14510.1 | Thale cress | plastid | 45.43 | 44.43 |
| CDY70711 | Canola | nucleus | 12.4 | 42.8 |
| HORVU1Hr1G001270.1 | Barley | cytosol, nucleus | 5.86 | 42.62 |
| HORVU1Hr1G083550.4 | Barley | plasma membrane | 32.13 | 36.77 |
| HORVU5Hr1G057460.1 | Barley | nucleus, plastid | 37.43 | 33.1 |
| HORVU2Hr1G081140.2 | Barley | plastid | 32.13 | 26.19 |
| Bra036994.1-P | Field mustard | nucleus | 20.07 | 24.02 |
| HORVU3Hr1G110360.1 | Barley | mitochondrion | 9.24 | 20.5 |
| HORVU2Hr1G084980.4 | Barley | plastid | 10.48 | 16.55 |
| HORVU1Hr1G019580.2 | Barley | plastid | 8.12 | 12.59 |
Protein Annotations
| MapMan:16.12.2.1.3 | Gene3D:3.30.110.60 | UniProt:A0A287WHI1 | InterPro:CFM3 | ncoils:Coil | GO:GO:0000373 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | EnsemblPlantsGene:HORVU7Hr1G052190 | EnsemblPlants:HORVU7Hr1G052190.1 | InterPro:IPR001890 |
| InterPro:IPR035920 | PFAM:PF01985 | PFscan:PS51295 | PANTHER:PTHR31846 | PANTHER:PTHR31846:SF13 | InterPro:RNA-binding_CRM |
| SMART:SM01103 | SUPFAM:SSF75471 | UniParc:UPI000B476FD6 | InterPro:YhbY_like_sf | SEG:seg | : |
Description
No Description!
Coordinates
chrchr7H:-:198245435..198252919
Molecular Weight (calculated)
99358.3 Da
IEP (calculated)
6.191
GRAVY (calculated)
-0.634
Length
887 amino acids
Sequence
(BLAST)
(BLAST)
001: WGRGSRCSYC IIHSPHPPAP SMAFSPALHL HHPPRLHHLL LSSNPLSSSS CAQYPWLSAW SRPRRGLRPP APALDLRPEP SPTSGSDDED AVGTSRHSGR
101: STMSLILHRL KRAGYSLEAQ IPPSTFSQHP RRGSVEDVFR ADDGVLPNAR GGFDDDAESS LMDARFPWER PMPPPEAAAR AARSPAWMAE LTLPEPELRR
201: LRHAAMRIKS KTQVGGAGVT REIVAKIKEK WRTDEVVRVK VNGTPALNMR LFHEILERKT GGLVIWRSGT SVSLYRGVAY DVPDTTKGTN RTWQDVGMKS
301: SIKGPPIPSS IPNEKVNSMQ GSNGGLVSNT EKEEAIETVP EIKYEEEIGR LLDELGPRYS DWPGSNPLPV DADLLPATIP GYKPPFRVLP YGVRRSLSRK
401: DTTNLRRLAR GLPPHFALGR SRQLQGLAAA MVKLWERSSI AKVALKRGVQ LTTSERMAED IKKLTGGVML SRNNDFVVFY RGKDFLSTEL AEALLERERS
501: MKSLQDEEQA RLNAKLSFTS STEAFIESTV AGTLGETLEA NSKYGNELVD NHVDKMTRTV EAAKHADLVR KLEWKLALAE KRIAKAERVL GKVETALKPT
601: EDTKPPETIT DEERFMFRKL GLRMKAFLLL GRRGVFDGTI ENMHLHWKYR ELVKILVKAK SFADVKRTAL SLEVESGGVL VSVDKVSKGY AIVVFRGKDY
701: KRPSMLRPRN LLSKRKALAR SIELQRMEAL GRHIEKLNRR VNQLRSELVQ MEDVKDQGDE ELYAKLDSAY SSEDEDVEDE DDDAYIRSFD NPIARATADD
801: ENETAIEDSE SSYSNDYDSA EDNGDCDEED EVNDVEYSDY DEDEDCEPAV ISAGNFQPIM YSDFSDGDRP LEEGAESDER CSDLRSR
101: STMSLILHRL KRAGYSLEAQ IPPSTFSQHP RRGSVEDVFR ADDGVLPNAR GGFDDDAESS LMDARFPWER PMPPPEAAAR AARSPAWMAE LTLPEPELRR
201: LRHAAMRIKS KTQVGGAGVT REIVAKIKEK WRTDEVVRVK VNGTPALNMR LFHEILERKT GGLVIWRSGT SVSLYRGVAY DVPDTTKGTN RTWQDVGMKS
301: SIKGPPIPSS IPNEKVNSMQ GSNGGLVSNT EKEEAIETVP EIKYEEEIGR LLDELGPRYS DWPGSNPLPV DADLLPATIP GYKPPFRVLP YGVRRSLSRK
401: DTTNLRRLAR GLPPHFALGR SRQLQGLAAA MVKLWERSSI AKVALKRGVQ LTTSERMAED IKKLTGGVML SRNNDFVVFY RGKDFLSTEL AEALLERERS
501: MKSLQDEEQA RLNAKLSFTS STEAFIESTV AGTLGETLEA NSKYGNELVD NHVDKMTRTV EAAKHADLVR KLEWKLALAE KRIAKAERVL GKVETALKPT
601: EDTKPPETIT DEERFMFRKL GLRMKAFLLL GRRGVFDGTI ENMHLHWKYR ELVKILVKAK SFADVKRTAL SLEVESGGVL VSVDKVSKGY AIVVFRGKDY
701: KRPSMLRPRN LLSKRKALAR SIELQRMEAL GRHIEKLNRR VNQLRSELVQ MEDVKDQGDE ELYAKLDSAY SSEDEDVEDE DDDAYIRSFD NPIARATADD
801: ENETAIEDSE SSYSNDYDSA EDNGDCDEED EVNDVEYSDY DEDEDCEPAV ISAGNFQPIM YSDFSDGDRP LEEGAESDER CSDLRSR
001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S
Arabidopsis Description
CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.