Factsheet for VIT_05s0020g04770.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92332	Soybean	plastid	60.2	65.03
KRH34465	Soybean	plastid	55.43	62.11
PGSC0003DMT400002898	Potato	mitochondrion	60.75	62.06
Solyc09g083350.2.1	Tomato	mitochondrion	59.76	61.04
CDY10696	Canola	plastid	55.77	58.76
CDY10350	Canola	plastid	56.43	58.71
Bra033883.1-P	Field mustard	mitochondrion	55.65	57.97
AT3G23070.1	Thale cress	plastid	56.21	57.55
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	53.88	57.24
TraesCS4A01G150500.1	Wheat	plastid	46.12	55.99
CDY16286	Canola	plastid	52.33	54.82
Bra036865.1-P	Field mustard	plastid	52.22	54.77
CDY29740	Canola	plastid	53.22	54.67
AT4G14510.1	Thale cress	plastid	54.43	54.13
Zm00001d007572_P001	Maize	plastid	48.67	52.14
TraesCS4B01G161000.1	Wheat	plastid	49.11	51.93
TraesCS4D01G150700.1	Wheat	plastid	49.0	51.88
HORVU7Hr1G052190.1	Barley	plastid	50.11	50.96
OQU83762	Sorghum	cytosol, nucleus, plastid	47.12	49.71
Os11t0592400-00	Rice	plastid	48.56	49.44
CDY70711	Canola	nucleus	13.08	45.91
VIT_11s0016g02100.t01	Wine grape	plastid	39.91	40.72
VIT_14s0006g02670.t01	Wine grape	mitochondrion	8.09	38.62
VIT_17s0000g03610.t01	Wine grape	plastid	34.59	37.59
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	15.96	35.91
GSMUA_Achr8P05580_001	Banana	plasma membrane	20.4	31.56
VIT_14s0066g01910.t01	Wine grape	cytosol	33.37	28.83
VIT_10s0092g00060.t01	Wine grape	nucleus	8.31	27.88
Bra036994.1-P	Field mustard	nucleus	20.4	24.83
VIT_12s0035g00830.t01	Wine grape	nucleus	8.09	22.05
VIT_05s0102g00700.t01	Wine grape	plastid	8.98	19.47
VIT_14s0066g00360.t01	Wine grape	nucleus	9.87	8.34

Protein Annotations

EntrezGene:100257970	wikigene:100257970	MapMan:16.12.2.1.3	Gene3D:3.30.110.60	EMBL:AM477414	ProteinID:CAN79523
ProteinID:CAN79523.1	ProteinID:CBI26364	ProteinID:CBI26364.3	InterPro:CFM3	ncoils:Coil	UniProt:D7T793
EMBL:FN595749	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890
InterPro:IPR035920	EntrezGene:LOC100257970	wikigene:LOC100257970	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00019833CA	ArrayExpress:VIT_05s0020g04770
EnsemblPlantsGene:VIT_05s0020g04770	EnsemblPlants:VIT_05s0020g04770.t01	unigene:Vvi.13934	RefSeq:XP_002280226	RefSeq:XP_002280226.1	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:6624260..6632562

Molecular Weight (calculated)

101566.0 Da

IEP (calculated)

8.208

GRAVY (calculated)

-0.680

Length

902 amino acids

Sequence
(BLAST)

001: MALLPSRQFY PTTTSFLDSF HSTRLQFFRY GSSNRFRTHS SYVARNTIAS NSTNPQRKSN IVFTNTPVSQ YDSGGVSSSG GNWIDKWNGP HQKSHPKESR
101: PVMNYRNSET VSRSDGGSGG GSTMEKIVEK LKKFGYMDDV KETKENVQER IIEKGSIEDI FYIEEGILPN PQGGFSLDSP LGVENKGDGN GEVRFPWERP
201: KVEEGSVRIK SRTSLAELTL PESELRRLRN LTMRTKNKTK IGGGGVTQAV VDMIREKWKT SEIVKLKCEG AAALNMRRIH EILERKTGGL VIWRSGTSVS
301: LYRGVSYEVP VQLNKRVYKK NETSHSSFSS ITPNSFAISS NKTSGNAPAV GSNQNVHASQ ATLNITDGEN KDTESEVKYE DEIDKLLDGL GPRYTDWPGC
401: DPLPIDADLL PGKIHGYQPP FRILPYGVRS SLGLKEATAL RRLARVLPPH FALGRSRQLE GLAMAMIKLW ERSSIAKVAL KRGVQLTTSE RMAEDIKKLT
501: GGVLLSRNKD FLVFYRGKNF LSSDVTEALL ERERLAKALQ DEEEQARLRA STLITPTVGI TEQVGSAGTL GETLEADARW GKRLDDHDKQ KMLKKAEVAR
601: HANLVRKLER RLALAERKLM KAENALSKVE EFLKPANRPA DPESITDEER FMFRKLGLRM KAFLLLGRRG VFSGTVENMH LHWKYRELVK IIVKAKTFDQ
701: VKKTALALES ESGGVLVSVD KVSKGFAIVV FRGKDYQRPS TLRPKNLLTK RKALARSIEL QRREALYNHI SALQRNVEKL RSEIEQMDIV KDHGDEELYD
801: KLDSAYATED EHTEEEGDEA YLETYADEND GEHESDNSIH NHHIETNFPY DIQGEEFETE AAVQDEESET EPEAPKPHMH MSWSGDGGLR TDRLETEDAS
901: LQ

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.