CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92332	Soybean	plastid	91.43	88.14
VIT_05s0020g04770.t01	Wine grape	plastid	62.11	55.43
PGSC0003DMT400002898	Potato	mitochondrion	58.39	53.23
Solyc09g083350.2.1	Tomato	mitochondrion	58.14	53.0
CDY10696	Canola	plastid	53.66	50.47
CDY10350	Canola	plastid	54.16	50.29
AT3G23070.1	Thale cress	plastid	54.91	50.17
TraesCS4A01G150500.1	Wheat	plastid	46.09	49.93
Bra036865.1-P	Field mustard	plastid	53.29	49.88
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	52.55	49.82
Bra033883.1-P	Field mustard	mitochondrion	53.54	49.77
CDY16286	Canola	plastid	52.3	48.9
CDY29740	Canola	plastid	53.29	48.86
AT4G14510.1	Thale cress	plastid	53.29	47.3
Zm00001d007572_P001	Maize	plastid	49.32	47.15
TraesCS4D01G150700.1	Wheat	plastid	48.45	45.77
TraesCS4B01G161000.1	Wheat	plastid	48.32	45.6
OQU83762	Sorghum	cytosol, nucleus, plastid	48.2	45.38
Os11t0592400-00	Rice	plastid	48.94	44.47
HORVU7Hr1G052190.1	Barley	plastid	48.94	44.42
CDY70711	Canola	nucleus	12.42	38.91
KRH41639	Soybean	mitochondrion, plastid	33.04	36.59
KRH39182	Soybean	plastid	34.66	35.27
KRH48490	Soybean	nucleus	34.66	35.27
KRH02705	Soybean	plastid	34.41	34.89
GSMUA_Achr8P05580_001	Banana	plasma membrane	23.11	31.9
KRH01727	Soybean	plastid	29.19	31.46
KRH70401	Soybean	plastid	20.25	27.77
KRG93411	Soybean	plastid	32.42	25.24
KRG93409	Soybean	plastid	30.81	24.15
Bra036994.1-P	Field mustard	nucleus	19.38	21.05
KRH60382	Soybean	mitochondrion	9.44	20.49
KRH07419	Soybean	cytosol	6.58	20.31
KRH41679	Soybean	mitochondrion	9.19	19.95
KRH69093	Soybean	mitochondrion	11.06	19.91
KRH29618	Soybean	nucleus	6.46	18.31
KRH24621	Soybean	mitochondrion	8.82	16.63
KRH71856	Soybean	nucleus	10.31	16.02
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	9.07	14.63
KRG93197	Soybean	mitochondrion	9.81	12.1
KRH56532	Soybean	mitochondrion	9.81	12.1

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	EMBL:ACUP02006600	InterPro:CFM3	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G185400
GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	UniProt:K7LK82
EnsemblPlants:KRH34465	ProteinID:KRH34465	ProteinID:KRH34465.1	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0002958397	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:41840780..41848299

Molecular Weight (calculated)

90950.9 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.651

Length

805 amino acids

Sequence
(BLAST)

001: MALVPTCHLH PFFDSFHASP SFHSLLFRHS PNSTFLRPKP PFIFRCNPAK SFSTDKHWLK RWNDPTNNHA RPKPPRAVLG YSENGDASKS GLASSDEEGG
101: DGNTGGITLD RIVEKLKKFG YVEDGIQNKE RVIEKGSVED IFYVEEGMLP NSRGGFSSES PLGFGSFGSD DGEVRFPWEK PVVEELEERK SMRSRSKTSL
201: AELTLPESEL RRLLKLTFEK KHKTRIGRSG VTQAAVDKIY ERWKTSEIVR LKFEGEAALN MKRMHEILER KTGGLVIWRS GNSVSLYRGV SYEAPSVQQN
301: KKIYRKSKNS SKLLPTPSYS VGNSPNAAST SGTSAPLANL ESTNDNKEKD YLPKVNYEHE VDKLLDGLGP RYTDWPGCNP LPVDADMLPA TVPGYQPPFR
401: VLPFGVRATL GLREATSLRR IARTLPPHFA LGRNRQVQGL AVAMTKLWEI SSIAKVALKR GVQLTTSERM AEEIKKLTGA ILLSRNKDFL VFFRGKNFLS
501: ADVTQALLER ERMAKVMQDE EEQARLRASS LLIQTNNTSD LSAEAGTLGE TLEADAKWGE TLDERHKQKI MREAERKLRR AEKALMKLES FLKPSEYKTD
601: PESITDEERF MFRKLGLRMK AFLFLGRCGV FDGTIENMHL HWKYWELVKK IVKAKTFERV KKIALALEAE SGGVLVSVDK VSKGYSVIVY RGKDYQRPST
701: LRPKNLLTKR KALARSIELQ RHENVKDKGD EALYDKLDSA YPSDDENYEV EDGEDGEEGD EAYLETHNSE NDSEIESEVE SDNMYPPIFL PHQVEGQGSF
801: DFGDT

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.