Factsheet for Solyc09g083350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002898	Potato	mitochondrion	96.94	96.94
Solyc08g044250.1.1	Tomato	mitochondrion	3.85	61.82
KRG92332	Soybean	plastid	56.85	60.12
VIT_05s0020g04770.t01	Wine grape	plastid	61.04	59.76
KRH34465	Soybean	plastid	53.0	58.14
CDY10696	Canola	plastid	54.59	56.31
Bra033883.1-P	Field mustard	mitochondrion	54.7	55.77
CDY10350	Canola	plastid	54.7	55.71
AT3G23070.1	Thale cress	plastid	55.15	55.28
TraesCS4A01G150500.1	Wheat	plastid	45.98	54.64
CDY16286	Canola	plastid	52.66	54.01
CDY29740	Canola	plastid	53.34	53.64
Bra036865.1-P	Field mustard	plastid	52.1	53.49
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	51.3	53.36
AT4G14510.1	Thale cress	plastid	53.34	51.93
Zm00001d007572_P001	Maize	plastid	48.7	51.07
TraesCS4D01G150700.1	Wheat	plastid	49.04	50.82
TraesCS4B01G161000.1	Wheat	plastid	48.58	50.29
HORVU7Hr1G052190.1	Barley	plastid	49.38	49.15
OQU83762	Sorghum	cytosol, nucleus, plastid	47.45	49.01
Os11t0592400-00	Rice	plastid	47.9	47.74
CDY70711	Canola	nucleus	12.57	43.19
Solyc07g039500.2.1	Tomato	plastid	36.92	40.15
Solyc03g119450.2.1	Tomato	nucleus	32.96	35.49
GSMUA_Achr8P05580_001	Banana	plasma membrane	22.2	33.62
Solyc02g086200.1.1	Tomato	plastid	27.63	30.42
Bra036994.1-P	Field mustard	nucleus	20.27	24.16
Solyc02g087250.2.1	Tomato	extracellular	32.84	23.0
Solyc09g005270.2.1	Tomato	mitochondrion	9.29	22.4
Solyc01g105090.2.1	Tomato	plastid	9.06	21.33
Solyc06g082990.2.1	Tomato	mitochondrion	10.76	20.56
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	8.38	17.92
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	10.08	15.53

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	InterPro:CFM3	ncoils:Coil	GO:GO:0000373	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	UniProt:K4CVW1	PFAM:PF01985
PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471
EnsemblPlantsGene:Solyc09g083350.2	EnsemblPlants:Solyc09g083350.2.1	UniParc:UPI000276C739	InterPro:YhbY_like_sf	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:69012389..69018950

Molecular Weight (calculated)

100514.0 Da

IEP (calculated)

9.593

GRAVY (calculated)

-0.656

Length

883 amino acids

Sequence
(BLAST)

001: MALVPSHQFY PRTTRLSFFR YSSSKPFKKP NFHAPHDIVN QDCIFKQNPS KRSNFVVTPH DVVNKDCIFK RTPLKRSNFV VKNSSRRWNL DTISPNLKSR
101: DSGTSVFSSS WLGKWNETRN DIKLKKAQIV LNYRNSNGDT SGSDCEESIS GSTMDRIVEK LKKFGYADEA TEKEKREKRV VEKGSIEDIF FVEEGILPNV
201: RGGFSEETPF GDENIIAKDG VVGFPWEKPL VKKEESNSMA SRSRTHLAEL TLPASELRRL TNLALRIKNK SRITGAGVTQ QVVETIREKW KTSEVVRLKV
301: EGAPALNMKR MHEILERKTG GLVIWRSGTS VALYRGVSYE TPSERMKKRI MRRDEIRQKN SPIVDGESNQ NSRNDVDSLR EDSVDTSEEN KSIDRQSEVN
401: YEDEVDKLLD GLGPRYTDWP GSGPLPVDAD LLPGIVPGYQ PPFRILPYGV RSTLAAREAT ALRRLARVLP PHFALGRSRQ HQGLASVMVK LWQRSSIAKI
501: AIKRGVQLTT SERMAEDIKK LTGGMLLSRN KDFLVFYRGK DFLSPEVAEA LLEKERLAKT LQDEEEKARL RASLNLTAGV TTINSSRTAG TLGETLDADA
601: RWGKRLDDKH KENVMREAEL LRHGDLVRKL EKKLAFAEKK LMKAERVLSK VEETLNPLDR HAEPDSLTDE ERFMFRKLGL RMKAFLLLGR RGIFDGTVEN
701: MHLHWKYREL VKIMVKAKNF EQVSKIALAL EAESGGILVS VDKVSKGYAI IVFRGKDYSR PPTLRPKNLL TKRKALARSI ELQRREALLE HISAVQTRVG
801: QLTAEIEQLA SLKDSADDEL YDKLNSAYSS EDEDSEEEGD DAFIEVFDND NDVVHRSDDS DDIPHPEREF QYIHQNESER ELV

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.