CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007572_P001	Maize	plastid	85.85	87.17
TraesCS4A01G150500.1	Wheat	plastid	66.55	76.58
TraesCS4D01G150700.1	Wheat	plastid	72.63	72.89
TraesCS4B01G161000.1	Wheat	plastid	72.51	72.68
Os11t0592400-00	Rice	plastid	73.92	71.33
HORVU7Hr1G052190.1	Barley	plastid	72.87	70.24
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	52.75	53.12
KRG92332	Soybean	plastid	48.66	49.82
KRH34465	Soybean	plastid	45.38	48.2
Solyc09g083350.2.1	Tomato	mitochondrion	49.01	47.45
PGSC0003DMT400002898	Potato	mitochondrion	49.01	47.45
CDY10696	Canola	plastid	47.49	47.43
VIT_05s0020g04770.t01	Wine grape	plastid	49.71	47.12
Bra033883.1-P	Field mustard	mitochondrion	47.72	47.11
CDY10350	Canola	plastid	47.6	46.94
AT3G23070.1	Thale cress	plastid	47.37	45.97
CDY16286	Canola	plastid	45.26	44.95
Bra036865.1-P	Field mustard	plastid	44.8	44.53
CDY29740	Canola	plastid	45.5	44.31
AT4G14510.1	Thale cress	plastid	45.38	42.78
CDY70711	Canola	nucleus	12.75	42.41
KXG22496	Sorghum	plastid	32.98	35.21
EER96635	Sorghum	plastid	38.01	33.78
EES13710	Sorghum	plastid	26.78	31.46
OQU81723	Sorghum	plastid	34.15	27.94
EES12394	Sorghum	mitochondrion	9.47	23.96
Bra036994.1-P	Field mustard	nucleus	19.77	22.81
EES02081	Sorghum	mitochondrion	9.82	20.74
KXG26557	Sorghum	mitochondrion	11.58	19.72
EES17695	Sorghum	plastid	9.71	12.12

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	UniProt:A0A1Z5RJ30	InterPro:CFM3	ncoils:Coil	GO:GO:0000373
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	EnsemblPlants:OQU83762
ProteinID:OQU83762	ProteinID:OQU83762.1	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF13
InterPro:RNA-binding_CRM	SMART:SM01103	EnsemblPlantsGene:SORBI_3005G169600	SUPFAM:SSF75471	UniParc:UPI000B8BABBD	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:64833184..64838677

Molecular Weight (calculated)

94605.8 Da

IEP (calculated)

5.337

GRAVY (calculated)

-0.727

Length

855 amino acids

Sequence
(BLAST)

001: RSRSRLRAPP PPALDLRPEP SPSSDSDDED AVGTSRSSGR STMSLILSRL RRAGYSPAED PRAAAASSHH PPRGSVEDVF RADDGVLPNA RGGFDAADEE
101: LGDARFPWER PMPPPEAAPP RATRSPTWMA ELTLPAAELR RLRHAAIRIK SRTKVGGAGV TREIVEKIKE KWKTEEVVRV KVSGTPALNM RLFHEILERK
201: TGGLVIWRSG TSVSLYRGVD YDEPETTKGS KKNSQSLSMK SPIKGSPNPP LPPTEKANSV QDRNGPLVSN AGKEEIVVQA PEIKYEDEID KLLDELGPRY
301: TDWPGSDPLP VDADLLPATV PGYKPPFRVL PYGVRPSLSR MDTTNLRRLA RGLPPHFALG RSRQLQGLAN AMVKLWEKSS IAKVALKRGV QLTTSERMAE
401: DIKKLTGGVM LSRNNEFIVF YRGKDFLSSE LAEVLLERER LAKSLQDEEE ARRKAASYFS SSAEKYVQPT VAGTLGETLE ANSKYGTKLD ENHEDKMART
501: VEAARHADLV RKLEWKLSLA QKKMEKAERV LGKVETALRP TEDSRPETIT DEERFMFRKL GLRMKAFLLL GRRGVFDGTI ENMHLHWKYR ELVKILVKAK
601: SFADVKRIAL SLEAESGGIL VSVDKVSKGY AIVVFRGKNY RRPSSLRPRN LLSKRKALAR SIELQRHQAL SRHFAKLNRK VAQLKAELVQ MEDVKDQGDE
701: ELYAKLDAAY SSDEEDMEDE DDDEAYLERF DNEVAGATAE DGSESVDDEA DYPDSDDEAG DYSDEDDDGE DDQEAFGYDD GDEAAAGVSN ADFCAGEVRF
801: GSSDRGDHGL EGAASCGEWD GKCNDEASDG GQHSHTEKEQ PPELASSRTG GASAS

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.