CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020230_P006	Maize	plastid	89.19	89.0
GSMUA_Achr8P05570_001	Banana	cytosol	24.74	69.19
Os09t0363100-01	Rice	plastid	67.67	68.74
TraesCS5A01G194600.1	Wheat	plastid	69.23	68.45
TraesCS5B01G190100.1	Wheat	plastid	69.13	68.35
TraesCS5D01G197600.1	Wheat	plastid	62.99	67.04
HORVU5Hr1G057460.1	Barley	nucleus, plastid	69.33	66.5
Bra024130.1-P	Field mustard	cytosol	35.86	53.82
CDY30199	Canola	cytosol	35.55	53.35
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	5.09	49.49
VIT_11s0016g02100.t01	Wine grape	plastid	44.18	48.08
Solyc07g039500.2.1	Tomato	plastid	40.12	47.54
PGSC0003DMT400056675	Potato	cytosol, plastid	40.23	47.31
CDY46704	Canola	plastid	38.46	47.25
KRH02705	Soybean	plastid	38.57	46.73
AT4G29750.1	Thale cress	plastid	38.67	44.23
OQU83762	Sorghum	cytosol, nucleus, plastid	33.78	38.01
KXG22496	Sorghum	plastid	29.94	35.96
EES13710	Sorghum	plastid	22.97	30.36
EES12394	Sorghum	mitochondrion	8.52	24.26
OQU81723	Sorghum	plastid	25.26	23.25
EES02081	Sorghum	mitochondrion	8.11	19.26
KXG26557	Sorghum	mitochondrion	9.25	17.73
EES17695	Sorghum	plastid	8.42	11.82

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	EntrezGene:8055576	UniProt:C5XAP2	ncoils:Coil	EnsemblPlants:EER96635
ProteinID:EER96635	ProteinID:EER96635.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF7
InterPro:RNA-binding_CRM	SMART:SM01103	EnsemblPlantsGene:SORBI_3002G181000	SUPFAM:SSF75471	UniParc:UPI0001A83A4A	RefSeq:XP_002460114.1
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:56219243..56223750

Molecular Weight (calculated)

107193.0 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.687

Length

962 amino acids

Sequence
(BLAST)

001: MALHLPPPAL STTPPFLSAL RPARLPCVRC TRTNTATASV SSSPPASASS PSASSPVASD GAGGRKSKKK SRPLKPSFEE HALRRWSSRA PSQRASVPWE
101: QPQQQSPSLP HRDSRESGGA GGRNRSGGGS SATLRSIVDY FGGVSSNDDG VGAEEGAWDT TAVQGEAARE QDDGSHFRPS YLLGSQPVSA PWIHGEESTS
201: DRVSGPVAEG EEGMDMSDVS DDELSLEDRD KEEIDDGEEL PTGSSEEQLY DDYATPTVNS SYEVDLSADR DSYGGRFDRS MRQGSVNTIV KTLRGSMEES
301: DPNAAIELSN AEDFVQKLGP VLLPWEREEE DDEAFSGGRV GRRSNTELAE RTIPEPELRR LRDTALRMKE RIKVGPGGVT QDIVESIHRK WKVDEVVKMR
401: FEGPPSLNMK RTHDLLEDRT GGVVIWRSGR SVVLYRGMNY NLQCVQSYAK SIETDSGKEV DDASSAVSSH GGHNLQDSRE AGAKRLTSTE NFSLESSETF
501: DIDNFLDQLG PRYRDWSGRG PVPVDADLLP GVVHGYKPPF RVLPYKIKST LRDKEMTTLR RLSRQTAPHF ALGRNREHQG LAAAMVKLWE KSAIAKIAIK
601: RGVPNTCNDR MAEEIKKLTG GVLLSRNKEY IVFYRGNDFI APKVRQVLVE KQEQAITQQD EEELARLKAS ASIITVPKGI KGPLVAGTLT ETTEAKSRWG
701: MSLNDKQREE EMKRLSLLKH TSLLKNLKRK LILAKTKVAK AERALAKVQE FLSPAELPTD LETVTDEERF LFRRIGLKMR AFLMLGRREV FDGTVQNMHL
801: HWKHRELVKI IVRGKSFAQV KHIAISLEAE SEGVLISLDK TSKGYAIIFY RGKNYRRPQI MKPRNLLTRR QALARSIELQ RREALKHHIS SLQGKIWKLQ
901: SQLVQTKVAS EKQDLKLLQT VEDDLSSDDD DDVEDDGEEA YLQTYSSADE EDVEDDANNE YI

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.