CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07517
KXG20466
KXG29640
KXG38192
OQU78428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01370.1	EES07517	AT3G48150.1	21798944
AT3G01370.1	KXG38192	AT4G39050.1	21798944
AT3G01370.1	KXG20466	AT5G20280.1	21798944
AT3G01370.1	KXG29640	AT5G20280.1	21798944
AT3G01370.1	OQU78428	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025633_P007	Maize	plastid	90.24	90.76
Zm00001d025629_P007	Maize	plastid	90.24	90.76
TraesCS2B01G346500.1	Wheat	plastid	72.73	70.05
TraesCS2D01G327400.1	Wheat	plastid	71.67	69.03
Os04t0464800-00	Rice	plastid	56.27	68.61
HORVU2Hr1G081140.2	Barley	plastid	70.53	67.74
TraesCS2A01G335400.1	Wheat	plastid	71.96	67.26
Solyc08g044250.1.1	Tomato	mitochondrion	3.25	61.82
PGSC0003DMT400069622	Potato	cytosol	13.11	54.58
GSMUA_Achr10P...	Banana	plastid	47.85	50.05
CDY49049	Canola	plastid	44.5	47.64
CDY37526	Canola	plastid	44.21	47.09
Bra039123.1-P	Field mustard	plastid	44.5	46.92
AT3G01370.1	Thale cress	plastid	44.4	45.9
VIT_14s0066g01910.t01	Wine grape	cytosol	45.84	45.88
KRG93409	Soybean	plastid	44.4	45.18
PGSC0003DMT400003527	Potato	plastid	42.2	42.04
KRG93411	Soybean	plastid	40.29	40.72
Solyc02g087250.2.1	Tomato	extracellular	42.87	35.53
OQU83762	Sorghum	cytosol, nucleus, plastid	27.94	34.15
KXG22496	Sorghum	plastid	24.31	31.71
EES13710	Sorghum	plastid	21.44	30.77
EER96635	Sorghum	plastid	23.25	25.26
EES12394	Sorghum	mitochondrion	7.37	22.78
EES02081	Sorghum	mitochondrion	8.33	21.48
KXG26557	Sorghum	mitochondrion	8.9	18.53
EES17695	Sorghum	plastid	7.75	11.82

Protein Annotations

MapMan:16.12.2.1.2	Gene3D:3.30.110.60	UniProt:A0A1Z5RD84	ncoils:Coil	GO:GO:0000372	GO:GO:0000373
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009532
GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	EnsemblPlants:OQU81723	ProteinID:OQU81723
ProteinID:OQU81723.1	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF16	InterPro:RNA-binding_CRM
SMART:SM01103	EnsemblPlantsGene:SORBI_3006G110200	SUPFAM:SSF75471	UniParc:UPI000B4261B9	InterPro:YhbY_like_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:47901100..47909899

Molecular Weight (calculated)

115736.0 Da

IEP (calculated)

8.548

GRAVY (calculated)

-0.575

Length

1045 amino acids

Sequence
(BLAST)

0001: MLLSFSPHPS PLLLSLPSST PACKPHARLR PVHASASAPP SPELLGKSAL RRISEKLRSL GYLETGSETP TPAPNKSGDA PSPGEIFVPT PAQLPRHRVG
0101: STIDPSWATG DGEAGSAARQ RRRGRGRDAS GSAASAPPSA AELALPRDEL RRLQGIGIRV RKRLKVGKAG ITEGIVNGIH ERWRNAEVVK LRCEDVWAMN
0201: MRRTHEILER KTGGLVIWRS GSTIILYRGT NYKYPYFHYS ERVDSFLDKE SSDLSSSGDE DEEDETSSQH DSSHEESSEN PVVACTEQIN AGEGKSQTVG
0301: YLNQSLSREK DTTHPISSTK RLVFDTNEGN LDIRTGAPNE QHARLQENTR ADRPSKFGPR ERSSLVAGVG SPNKFRLQLP GEVKLAEEAD KLLDGLGPRF
0401: SGWWGYDPLP VDADLLPAIV PGYRRPFRLL PSGVPPKLTD REMTILRRLA HPLPFHYALG RSSNLQGLAA SMIKLWERCE VAKIALKRDA HNTDSELITE
0501: EIKVVLQDLT GGTLLSRDKE SIVFYRGKDF LPPAVSLAIE KRRKLGSSTI YKPKPDIEEN MPTQDDSVLK VSNDVSVHIR EEGTSVTEVR AKSLNTVAKN
0601: VEARLSQAIA EKERAEKLLE ELEKASPLSK AEVRETISED ERYMLRKVGL KMKQFLLLGR RGVFDGTIEN MHLHWKYREL VKIICKEHRL EDVEYAARTL
0701: EAESGGILVA VEKVSKGHAI IVYRGKNYQR PSKLRPKTLL SKRDALKRSV ENQRCKSLKV HVLKLSKNID YLKDQMNSSY YHKDMHDPSV NSGTLQQHDE
0801: EVPEVAPMSS EPEVECASVE MDRALNLTKS GVPVEDMQSK VCFDKLEDDS SAAAGPCLTG SSSASLSNLI RHQNQHSSTV TFSPDSHCEN DSKDVDGIKL
0901: DVESSSVLPL RGTPLSNQER LVLRKQALKM KKRPVLSIGR NNVITGVAKT IKTHFKKHPL AIVNIKNRAD GTPIQQLISE LEEATGSVLV SRETNKVILY
1001: RGWGAEVAQE SSKESSADEG EKEVISPQLL EAIRLECGLL PGDSE

Best Arabidopsis Sequence Match ( AT3G01370.1 )
(BLAST)

0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L

Arabidopsis Description

CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.