CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032373_P004	Maize	plastid	91.07	85.33
TraesCS7A01G557100.1	Wheat	cytosol, plastid	70.05	70.93
TraesCS7D01G553500.1	Wheat	plastid	69.78	69.68
Os08t0360100-01	Rice	plastid	69.09	69.38
TraesCS7B01G481800.1	Wheat	cytosol, plastid	69.23	69.14
HORVU1Hr1G001270.1	Barley	cytosol, nucleus	11.13	66.39
VIT_14s0006g02680.t01	Wine grape	cytosol, extracellular, mitochondrion, plastid, vacuole	26.92	48.88
GSMUA_Achr9P19190_001	Banana	plastid	49.59	45.99
VIT_14s0006g02670.t01	Wine grape	mitochondrion	11.26	43.39
KRH01727	Soybean	plastid	42.99	41.9
AT5G16180.1	Thale cress	endoplasmic reticulum	40.93	41.39
PGSC0003DMT400067878	Potato	plastid	43.27	39.28
Solyc02g086200.1.1	Tomato	plastid	42.99	39.03
KRH70401	Soybean	plastid	29.67	36.8
KXG22496	Sorghum	plastid	34.34	31.21
CDX85512	Canola	golgi	40.52	26.92
OQU83762	Sorghum	cytosol, nucleus, plastid	31.46	26.78
Bra023555.1-P	Field mustard	golgi	40.25	26.64
CDY38130	Canola	golgi	39.56	26.11
EER96635	Sorghum	plastid	30.36	22.97
EES12394	Sorghum	mitochondrion	10.03	21.6
OQU81723	Sorghum	plastid	30.77	21.44
EES02081	Sorghum	mitochondrion	9.48	17.04
KXG26557	Sorghum	mitochondrion	10.58	15.34
EES17695	Sorghum	plastid	9.07	9.64

Protein Annotations

MapMan:16.12.2.1.1.8	Gene3D:3.30.110.60	EntrezGene:8069883	UniProt:C5YKA1	ncoils:Coil	EnsemblPlants:EES13710
ProteinID:EES13710	ProteinID:EES13710.1	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001890
InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF10	InterPro:RNA-binding_CRM
SMART:SM01103	EnsemblPlantsGene:SORBI_3007G107700	SUPFAM:SSF75471	unigene:Sbi.9675	UniParc:UPI0001A87DF6	RefSeq:XP_002444215.1
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:38920212..38927520

Molecular Weight (calculated)

82498.1 Da

IEP (calculated)

10.446

GRAVY (calculated)

-0.659

Length

728 amino acids

Sequence
(BLAST)

001: MAPPPLPLFS PSPKAPPPPP WLHGSSTQSR DSAPPVPPPP ADATPPKPRT HSPKSAPAKK NTKTTAKPLT AGVPGGRTHR AVLGIIRRVR SLELSDAPSA
101: SSVHDSNAGA AAAFHLPIEP SPPREPGQEV VEKAKPRAVP WAAARDEGLK VALRREKKPR KPTRAETELE TDELDRLRRL ARGMGRWARA KKAGVTDEVV
201: EEMRREWASG EELAAVRIVE PLRRSMDRAR EILEIKTGGL VVWTKGDIHF VYKGSKYQQN AKHSHTFVTN VHKGSLVKQN VRGEADDAFQ ENDQSICGQK
301: DEEPVKGTLY EREVNRLLDT LGPRFVDWWW DTPLPVDADL LPEFIPGFKT PFRQCPPGVR PTLADEELTY LRKLARPLPT HFALGRNTRL QGLAAAILKL
401: WEKSLIAKIA VKVGIQNTNN EQMAWNLKHL TGGTVILRNK DFVILYRGKD FLPGGVAQTV IQREAQVDDE QVKEEEARLK AVDSLQMVGE LSSDEESSVG
501: TFREYKDFHA DFVHANTEKS NTMIELEAEK YRLEKELKDH EWKLSILNKK IERSNQALAK LRSSWSPSEQ SADRELLTEE EKIMFRRIGR KMDGLVLLGR
601: RGIFDGVIEE IHQHWKHKEV VKVITKQNQA RQIMYTANLL EVETGGILIA VEKLTTSHAI ILYRGKNYRR PAKSSFSNLL TKREALRRSL EVQRRGSMKY
701: FVRERQKSIS ELKRRLRYVT RQIRYRTP

Best Arabidopsis Sequence Match ( AT5G16180.1 )
(BLAST)

001: MRNGINILSY PRFLSFCEVF VLLLCNFSDN PKLQTFTQML NSLFLSARAF PSLITNSSSR RAKSSQFDQF RENRGVSDAA IKVPTAPWMK GPLLLRPDEI
101: LDTKKRNKPR KVEEKTFKAL NRRESGVRGK KAMKKIVRNV EKLDEDSDSE ETQMDDLSEF EYLGRIEEKV ESKDRFGGKM PWEREEERFI LRRMKKESVP
201: TTAELILDEG LLNRLRREAS KMRKWVNVRK AGVTELVVNK IKSMWKLNEL AMVRFDVPLC RNMERAQEII EMKTGGLVVL SKKEFLVVYR GGPSYSSEGQ
301: DEISSSLYER EADRLLDGLG PRYMDWWMRR PFPVDADLLP EVVNGYMTPS RRCPPNTRAK LTDEELTYLR NIAQPLPFHF VLGRNYGLQG LASAIVKLWE
401: KCIIAKIAIK WGALNTNNEE MADELRYLTG GVLILRNKYL IVLYRGKDFL SDEVADLVED RERLLSRYQH FEETKRESDI ELLEVVTNGK QLKETNKSGT
501: LLEFQELQRK FGEMDPRNLE TEAEKARLEK ELKSQEHKLS ILKSKIEKSN MELFKLNSLW KPSEGDDDIE ILTNEERECL RRIGLKMNSS LVLGRRGVFF
601: GVMEGLHQHW KHREVAKVIT MQKLFSRVVY TAKALETESN GVLISIEKLK EGHAILIYRG KNYKRPSSKL MAQNLLTKRK ALQRSVVMQR LGSLKFFAYQ
701: RERAIEDLKV SLVNLQDSAF

Arabidopsis Description

CRS1Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF10]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.