CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042043_P001	Maize	mitochondrion	89.88	92.39
TraesCS3D01G505800.1	Wheat	mitochondrion	75.8	78.12
TraesCS3B01G562100.1	Wheat	mitochondrion	75.8	77.53
HORVU3Hr1G110360.1	Barley	mitochondrion	74.81	75.75
Os01t0958400-02	Rice	mitochondrion	75.31	73.14
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	76.54	71.43
Bra011945.1-P	Field mustard	mitochondrion	32.84	68.91
Solyc09g005270.2.1	Tomato	mitochondrion	52.59	58.2
PGSC0003DMT400030768	Potato	mitochondrion	51.85	57.07
KRH29618	Soybean	nucleus	40.0	57.04
Bra000492.1-P	Field mustard	mitochondrion	49.38	56.5
CDY31205	Canola	mitochondrion	49.38	53.76
CDX83289	Canola	mitochondrion	49.14	53.49
AT2G28480.1	Thale cress	mitochondrion	48.89	53.23
VIT_05s0102g00700.t01	Wine grape	plastid	54.07	52.64
PGSC0003DMT400039655	Potato	mitochondrion, plastid	49.63	50.76
GSMUA_Achr3P16860_001	Banana	mitochondrion	55.8	50.56
KRH24621	Soybean	mitochondrion	51.6	48.95
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	49.14	48.18
CDY15751	Canola	mitochondrion, plastid, vacuole	36.3	42.36
EES12394	Sorghum	mitochondrion	34.07	40.83
KXG26557	Sorghum	mitochondrion	30.86	24.9
EES17695	Sorghum	plastid	23.7	14.01
KXG22496	Sorghum	plastid	21.23	10.74
OQU83762	Sorghum	cytosol, nucleus, plastid	20.74	9.82
EES13710	Sorghum	plastid	17.04	9.48
OQU81723	Sorghum	plastid	21.48	8.33
EER96635	Sorghum	plastid	19.26	8.11

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	UniProt:C5XIK2	ncoils:Coil	EnsemblPlants:EES02081	ProteinID:EES02081
ProteinID:EES02081.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890
InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF2	InterPro:RNA-binding_CRM
SMART:SM01103	EnsemblPlantsGene:SORBI_3003G432800	SUPFAM:SSF75471	unigene:Sbi.12220	UniParc:UPI0001A84BC0	RefSeq:XP_002456961.1
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:73493428..73498030

Molecular Weight (calculated)

46100.2 Da

IEP (calculated)

10.054

GRAVY (calculated)

-0.793

Length

405 amino acids

Sequence
(BLAST)

001: MASRILSRQN LRKLASFTLQ NISQRQLISP YPPALRSTIA SPSKFLSPLY LSGHSLAVRW ATYGSVNLVL SDDGKPKFQI EEVEPSTKRR YLTKKRLKVQ
101: RKKEKKKRKE ANKNDPRRIR PKGKKIKQKF PTPEARLKYK IEKAKLKEVR LVEKLKKYEV AKAQGPMAKP DDLSGEERFY LKKVSQKKSN YVPVGRRGVF
201: GGVILNMHLH WKKHETVKVI CKPCKPGQIQ EYANEIARLS GGIPVNIIGD DTIVFYRGKN YVQPEVMSPI DTLSKKKALE KSKYEQSLET VRRFIAISEK
301: ELELYYRHVA LYGNPQSQKA DLVCGDDRET SLLKMGGLDQ GKDQEPHLAT NHFSDHHVSD VSESDEEDSS GSEYDVNDDE TESITSISED SIVSDHGDLA
401: NWGEA

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.